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Keywords: transcriptomics
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Journal Articles
J Exp Biol (2022) 225 (8): jeb242424.
Published: 29 April 2022
... to impaired seawater tolerance in smolts. In M13 and M14, exposure to SW alone resulted in the downregulation of gene networks involved in signal transduction, cell communication and DNA replication, consistent with previous transcriptomic studies reporting the regulation of these processes in the gill...
Includes: Supplementary data
Journal Articles
J Exp Biol (2022) 225 (7): jeb243630.
Published: 12 April 2022
... composition and architecture shows that intricate fine-tuning across gene, protein and fascicle scales shapes specialized muscle function. Myosin isoforms Soleus Tibialis anterior Transcriptomics Shortening velocity Mouse National Institutes of Health http://dx.doi.org/10.13039/100000002...
Includes: Supplementary data
Journal Articles
J Exp Biol (2021) 224 (16): jeb241885.
Published: 12 August 2021
... maintain performance. Therefore, transcriptomics has contributed to advances in understanding the cellular processes behind whole-organism physiological responses ( Miller et al., 2014 ; Evans, 2015 ). For example, some isoforms of heat shock proteins may be continuously expressed over time (i.e...
Includes: Supplementary data
Journal Articles
J Exp Biol (2020) 223 (24): jeb191262.
Published: 17 December 2020
...Alex S. Torson; Yun-wei Dong; Brent J. Sinclair ‘Omics’ methods, such as transcriptomics, proteomics, lipidomics or metabolomics, yield simultaneous measurements of many related molecules in a sample. These approaches have opened new opportunities to generate and test hypotheses about...
Journal Articles
J Exp Biol (2020) 223 (7): jeb213975.
Published: 3 April 2020
... transcriptomic responses to temperature; more differentially expressed genes were upregulated in the field compared with lab larvae. Developmental temperature fluctuations alone had minimal effects on long-term gene expression patterns, with the exception of a somewhat elevated stress response in the lab...
Includes: Supplementary data
Journal Articles
J Exp Biol (2019) 222 (6): jeb188300.
Published: 18 March 2019
..., and on transcriptome analysis, C. monoculus exhibits extreme intraspecific variation in the use of vitamin A 1 /A 2 chromophore in their photoreceptors. Fish living in turbid water had higher proportions of vitamin A 2 , shifting sensitivities to longer wavelengths, than fish living in clear water. Furthermore, we...
Includes: Supplementary data
Journal Articles
J Exp Biol (2019) 222 (1): jeb192195.
Published: 10 January 2019
... oscillations in the absence of external cues. The transcripts reported here with rigorous annotation and specific functions in circadian biology provide the groundwork for functional characterization of novel players in the zebrafish retinal clock. Recent advancement in the single cell transcriptome rendered...
Includes: Supplementary data
Journal Articles
J Exp Biol (2018) 221 (3): jeb164400.
Published: 13 February 2018
.... References Artigaud , S. , Thorne , M. A. S. , Richard , J. , Lavaud , R. , Jean , F. , Flye-Sainte-Marie , J. , Peck , L. S. , Pichereau , V. and Clark , M. S. ( 2014 ). Deep sequencing of the mantle transcriptome of the great scallop Pecten maximus . Mar...
Includes: Supplementary data
Journal Articles
J Exp Biol (2017) 220 (12): 2149–2153.
Published: 15 June 2017
... expressed transcripts. These data suggest face specialization in P. fuscatus is related to shifts in the brain transcriptome associated with genes distinct from those related to general visual learning and social interactions. * Author for correspondence ( berens.ali@gmail.com ) Competing...
Includes: Supplementary data
Journal Articles
J Exp Biol (2016) 219 (11): 1705–1716.
Published: 1 June 2016
... temperatures (14°C and 20°C) and used RNA sequencing to examine the transcriptome-wide responses to elevated water temperature in both species. Consistent with having a lower temperature tolerance, longfin smelt exhibited a pronounced cellular stress response, with an upregulation of heat shock proteins, after...
Includes: Supplementary data
Journal Articles
J Exp Biol (2015) 218 (24): 4005–4014.
Published: 1 December 2015
... on endocrine factors to regulate behavioral maturation, but whether neurosecretory systems are central to this process is not known. To explore this, we performed transcriptomic profiling of a neurosecretory region of the brain, the pars intercerebralis (PI) . We first compared PI transcriptional profiles...
Includes: Supplementary data
Journal Articles
J Exp Biol (2015) 218 (12): 1822–1833.
Published: 1 June 2015
...Brent L. Lockwood; Kwasi M. Connor; Andrew Y. Gracey; Jason E. Podrabsky; Jonathon H. Stillman; Lars Tomanek ABSTRACT Transcriptomics is a powerful tool for elucidating the molecular mechanisms that underlie the ability of organisms to survive and thrive in dynamic and changing environments. Here...
Includes: Supplementary data
Journal Articles
J Exp Biol (2015) 218 (12): 1925–1935.
Published: 1 June 2015
...Tyler G. Evans; Jason E. Podrabsky; Jonathon H. Stillman; Lars Tomanek ABSTRACT Transcriptomics has emerged as a powerful approach for exploring physiological responses to the environment. However, like any other experimental approach, transcriptomics has its limitations. Transcriptomics has been...
Journal Articles
J Exp Biol (2015) 218 (5): 767–777.
Published: 1 March 2015
... 2014 29 12 2014 © 2015. Published by The Company of Biologists Ltd 2015 Summary : Cold-acclimated juncos exhibit elevated thermogenic capacities and transcriptomic signatures indicating enhanced oxygen delivery and increased transport and β-oxidation of fatty acids. Phenotypic...
Includes: Supplementary data
Journal Articles
J Exp Biol (2011) 214 (22): 3808–3821.
Published: 15 November 2011
... transcriptomic and proteomic experiments, physiological experiments and RNA interference to explore the mechanistic basis for this lipid loss. Lipid loss was associated with thousands of gene expression changes in abdominal fat bodies. Many of these genes were also regulated in young bees by nutrition during...
Includes: Supplementary data
Journal Articles
J Exp Biol (2011) 214 (13): 2125–2139.
Published: 1 July 2011
... of retained paralogues of IGF signalling pathway genes. * Author for correspondence ( ipgda@st-andrews.ac.uk ) 8 3 2011 © 2011. 2011 teleost myotomal muscle fish nutrition growth transcriptomics Growth hormone is synthesized, stored and secreted by specialized cells...
Includes: Supplementary data
Journal Articles
J Exp Biol (2010) 213 (20): 3548–3558.
Published: 15 October 2010
..., Cambridge, MA 02138, USA * Author for correspondence ( blockwoo@stanford.edu ) 8 6 2010 © 2010. 2010 invasive species microarray Mytilus galloprovincialis Mytilus trossulus stress temperature transcriptomics Invasive species pose numerous threats to ecosystems...
Includes: Supplementary data
Journal Articles
J Exp Biol (2010) 213 (6): 971–979.
Published: 15 March 2010
... to this variation in the HSR, species from stable and highly variable environments are likely to be more affected by climate change than species from moderately variable environments. ltomanek@calpoly.edu 23 11 2009 © 2010. 2010 heat shock proteins heat shock response transcriptomics...
Journal Articles
J Exp Biol (2010) 213 (1): 118–127.
Published: 1 January 2010
... by 11 residues from one another. Recently a CLDH was predicted via transcriptomics from the cladoceran crustacean D. pulex ( Gard et al., 2009 ). Like its insect counterparts, this peptide is 31 amino acids in length, is amidated at its C-terminus, and possesses an amino acid sequence similar...
Journal Articles
J Exp Biol (2009) 212 (16): 2579–2594.
Published: 15 August 2009
... species possess the physiological capacity to compensate for the potentially adverse effects of ocean acidification. We carried out a microarray-based transcriptomic analysis of the physiological response of larvae of a calcifying marine invertebrate, the purple sea urchin, Strongylocentrotus purpuratus...