Paramecium primaurelia is a unicellular eukaryote that moves in freshwater by ciliary beating and responds to environmental stimuli by altering motile behaviour. The movements of the cilia are controlled by the electrical changes of the cell membrane: when the intraciliary Ca2+ concentration associated with plasma membrane depolarization increases, the ciliary beating reverses its direction, and consequently the swimming direction changes. The ciliary reversal duration is correlated with the amount of Ca2+ influx. Here, we evaluated the effects due to the activation or blockade of N-methyl-d-aspartic acid (NMDA) receptors on swimming behaviour in Paramecium. Paramecia normally swim forward, drawing almost linear tracks. We observed that the simultaneous administration of NMDA and glycine induced a partial ciliary reversal (PaCR) leading to a continuous spiral-like swim. Furthermore, the duration of continuous ciliary reversal (CCR), triggered by high external KCl concentrations, was longer in NMDA+glycine-treated cells. NMDA action required the presence of Ca2+, as the normal forward swimming was restored when the ion was omitted from the extracellular milieu. The PaCR and the enhancement of CCR duration significantly decreased when the antagonists of the glutamate site D-AP5 or CGS19755, the NMDA channel blocker MK-801 or the glycine site antagonist DCKA was added. The action of NMDA+glycine was also abolished by Zn2+ or ifenprodil, the GluN2A and the GluN2B NMDA-containing subunit blockers, respectively. Searches of the Paramecium genome database currently available indicate that the NMDA-like receptor with ligand-binding characteristics of an NMDA receptor-like complex, purified from rat brain synaptic membranes and found in some metazoan genomes, is also present in Paramecium. These results provide evidence that functional NMDA receptors similar to those typical of mammalian neuronal cells are present in the single-celled organism Paramecium and thus suggest that the glutamatergic NMDA system is a phylogenetically old behaviour-controlling mechanism.
INTRODUCTION
Glutamate is the most widespread excitatory neurotransmitter in vertebrates, controlling both peripheral and central neurotransmission. Glutamatergic inputs are mediated by receptors subdivided into ionotropic and metabotropic receptor families. On the basis of their pharmacological profile, the ionotropic glutamate receptors are further subdivided into three subtypes: the α-amino-3-hydroxy-5-methylisoxazole-4-propionic acid (AMPA)-preferring receptor, the kainate-preferring receptor and the N-methyl-d-aspartate (NMDA) receptor (Watkins and Collingridge, 1994; Dingledine et al., 1999). Glutamate and ionotropic glutamatergic receptors are present in vertebrates as well as in prokaryotes and plants, suggesting that the glutamatergic system is archaic and phylogenetically conserved (Tikhonov and Magazanik, 2009).
The NMDA receptor mediates the vast majority of excitatory neurotransmission. In vertebrates, most of the NMDA receptors are heteromeric, composed of GluN1 subunits (which bind glycine) in combination with GluN2 subunits (which bind glutamate). As a consequence, the activation of these receptors requires the presence of both glutamate and glycine. The GluN1 subunit arises from one single gene with eight functional splice variants, whereas GluN2 is encoded by four different genes (Mori and Mishina, 1995; Zukin and Bennett, 1995). Recently, a glycine-binding GluN3 subunit, encoded by two different genes, has been identified. The GluN3 subunit can assemble with GluN1 to express a functional glycine receptor that is insensitive to glutamate (Chatterton et al., 2002), but it can also contribute to the expression of native GluN1/GluN2/GluN3 receptors, the activation of which results in an NMDA+glycine-evoked current, which is less sensitive to Mg2+ (Chatterton et al., 2002).
An atypical NMDA receptor-like complex composed of four proteins – the glutamate-binding protein (GBP), the glycine/N-[1-(2-thienyl)cyclohexyl]piperidine(TCP)-binding protein (Gly/TCP-BP), the (+)-3-(2-carboxypiperazin-4-yl)-propyl-1-phosphonic acid-binding protein (CPP-BP) and the phencycline-binding protein – has also been described (Ly and Michaelis, 1991; Kumar et al., 1994). This complex is able to induce the expression of glutamate-activated ion channels; its activity depends on the presence of glycine and permits the influx of Ca2+ ions (Aistrup et al., 1996). However, the exact stoichiometry of subunit assembly is still unknown and it has not yet been demonstrated whether these subunits can assemble with GluN subunits to express functional receptors.
The purpose of this study was to verify whether NMDA receptors are present in the ciliated protozoan Paramecium primaurelia (Sonneborn, 1975) by evaluating the effects of NMDA receptor activation on swimming behaviour. The locomotion of paramecia depends on ciliary movements, which are controlled by the electrical changes of the cell membrane (Eckert, 1972; Naitoh, 1974). It has been reported that membrane hyperpolarization is correlated with augmented ciliary beating and accelerated forward swimming (Naitoh and Eckert, 1973), whereas depolarization is correlated with ciliary reversal and backward swimming (Machemer and Eckert, 1973). Paramecia normally swim forward, except for episodic brief periods of backward swimming or whirling (Jennings, 1906). Upon
- CCR
continuous ciliary reversal
- CGS19755
cis-4-phosphonomethyl-2-piperidine carboxylic acid
- CPP-BP
(+)-3-(2-carboxypiperazin-4-yl)-propyl-1-phosphonic acid-binding protein
- d-AP5
d-2-amino-5-phosphonopentanoic acid
- DCKA
5,7-dichlorokynurenic acid
- EGTA
ethylene glycol tetraacetic acid
- GBP
glutamate-binding protein
- GluN1
NMDA receptor subunit 1
- GluN2
NMDA receptor subunit 2
- GluN3
NMDA receptor subunit 3
- Gly/TCP-BP
glycine/N-[1-(2-thienyl)cyclohexyl]piperidine(TCP)-binding protein
- GRINA
glutamate receptor, ionotropic, N-methyl-d-aspartate-associated protein 1
- MK-801
dizocilpine
- NMDA
N-methyl-d-aspartate
- PaCR
partial ciliary reversal
- PCR
periodic ciliary reversal
electrical, chemical or mechanical stimulation, the ciliary Ca2+ channels open, giving rise to a depolarizing Ca2+ action potential and to a transient increase in intraciliary Ca2+ concentration (Dryl, 1974; Machemer, 1988; Preston and Saimi, 1990). This increase in internal Ca2+ ions triggers the ciliary reversal. Three forms of behaviour related to ciliary reversal can be observed: (1) a continuous ciliary reversal (CCR), yielding relatively long periods of fast backward swimming mediated by full ciliary reversal, (2) a periodic ciliary reversal (PCR), characterized by brief and repeated episodes of backward swimming, and (3) a partial ciliary reversal (PaCR), giving rise to a spiral-like movement and resulting from the reversal of only part of the somatic cilia of the cells (Dryl, 1974). Whereas weak stimuli cause a moderate Ca2+ influx and a short circular movement, strong stimuli can sustain backward swimming for tens of seconds or minutes. The duration of backward swimming is proportional to the duration of the action potential and the addition of drugs able to reduce the inward calcium current decreases the duration of stimulated backward swimming (Hennessey and Kung, 1984). Hence, the swimming behaviour of the cell serves as a visual correlate of the electrical state of the cell membrane.
Our study indicates that the swimming behaviour of paramecia is modified by NMDA and that these changes are controlled by classic receptor antagonists, suggesting the existence of NMDA-like receptors at the cell membrane level.
RESULTS
Effects of NMDA on swimming behaviour
Fig. 1A is a representative image depicting the normal cell swimming in NMDA-free solution. However, in the presence of 200 μmol l−1 NMDA and 1 μmol l−1 glycine, and in the absence of Mg2+, cells exhibited a PaCR (Fig. 1B–D). Exposure to NMDA concentrations from 1 to 200 μmol l−1, in the presence of 1 μmol l−1 glycine, produced a concentration-dependent rise in the percentage of cells that adopt this spiral-like movement from 13% at 50 μmol l−1 NMDA to 100% at 200 μmol l−1 NMDA (Fig. 2, Table 1). Fig. 2 also shows that the exposure of paramecia to increasing concentrations of NMDA in the absence of exogenously added glycine failed to induce the PaCR in a significant percentage of cells. In addition, glycine (1 μmol l−1), in the absence of NMDA, did not lead to any modification of swimming behaviour in the 80 observed cells (Fig. 2, Table 1).
Ion dependence of the NMDA-induced swimming behaviour
In order to analyse the impact of Mg2+ ions on the NMDA-mediated changes in swimming behaviour, experiments were performed in the presence of 0.5–3.0 mmol l−1 MgCl2. Regardless of the concentration used, MgCl2 was unable to trigger ciliary reversal and 2.0 mmol l−1 MgCl2 completely counteracted the NMDA effect (Table 2). The NMDA+glycine-induced spiral-like Paramecium swimming relies on the influx of Ca2+ ions. Indeed, paramecia exposed to 200 μmol l−1 NMDA+1 μmol l−1 glycine in medium without Ca2+ and containing 1 mmol l−1 EGTA normally swim forward (Table 2). In contrast, the omission of Na+ from the extracellular milieu, replaced by an isosmotic amount of N-methylglucamine, failed to modify the spiral-like swimming behaviour induced by 200 μmol l−1 NMDA+1 μmol l−1 glycine (Table 2).
Effects of NMDA receptor antagonists on swimming behaviour
The 200 μmol l−1 NMDA+1 μmol l−1 glycine-induced PaCR was prevented by 1 μmol l−1 MK-801, a non-competitive NMDA receptor channel blocker (Fig. 3, Table 3). Fig. 3 and Table 3 also show that the spiral-like swimming was largely reduced by 40 μmol l−1 CGS19755 and by 200 μmol l−1 D-AP5, two selective antagonists at the glutamate-binding site located on the GluN2 subunits, as well as by the selective glycine antagonist DCKA (1 μmol l−1). Prevention of the NMDA+glycine-induced changes in Paramecium swimming by the above NMDA receptor antagonists is predictive of the involvement of GluN2-containing NMDA receptors. Chemical agents able to discriminate between GluN2A- and GluN2B-containing NMDA receptors in mammals are available. In particular, ifenprodil has been found to preferentially inhibit the mammalian GluN2B-containing NMDA receptor complex (Williams et al., 1993), while nanomolar Zn2+ was shown to act as a selective GluN2A-containing NMDA receptor antagonist (Paoletti et al., 1997). We investigated the effects of ifenprodil (10 μmol l−1) and ZnCl2 (100 nmol l−1) on the 200 μmol l−1 NMDA+1 μmol l−1 glycine-evoked cell spiral-like behaviour and found that both compounds were able to counteract NMDA effects (Fig. 3, Table 3). None of the antagonists administered in the absence of NMDA+glycerine were effective at the concentration used.
Effects of NMDA on swimming behaviour induced by membrane depolarization
When P. primaurelia membranes were depolarized using 40 mmol l−1 KCl, a CCR reaction was triggered. The average duration of the KCl-induced backward swimming amounted to 44.5±1.25 s (N=120 cells). The duration of backward swimming was dose-dependently increased by NMDA, with an augmentation of up to 20% by 200 μmol l−1 NMDA+1 μmol l−1 glycine (Fig. 4). Fig. 4 also shows that the CCR duration increment induced by NMDA was smaller in the absence of glycine. As high NMDA concentrations could induce receptor desensitization, we then used higher glycine concentrations (10 and 100 μmol l−1) to prevent NMDA desensitization. Indeed, it has been found that desensitization decreases with increasing glycine concentration in cultured hippocampal neurons as well as in oocytes injected with rat brain mRNA (Benveniste et al., 1990; Lerma et al., 1990; Mayer et al., 1989; Nahum-Levy et al., 2001; Vyklický et al., 1990). Our data indicate that in Paramecium the effects of 1–200 μmol l−1 NMDA are not modified by increasing glycine concentration from 1 to 10 or 100 μmol l−1 (Table 4).
Co-administration of NMDA and d-serine, a potent agonist at the glycine-binding site (Mothet et al., 2000), resulted in a significant increase in CCR duration (Table 5).
As Fig. 5 illustrates, the rise in the duration of the 40 mmol l−1 KCl-induced backward swimming behaviour brought about by 200 μmol l−1 NMDA+1 μmol l−1 glycine was counteracted by the NMDA receptor antagonists MK-801 (1 μmol l−1), CGS19755 (40 μmol l−1), D-AP5 (200 μmol l−1), DCKA (1 μmol l−1), ifenprodil (10 μmol l−1) and ZnCl2(100 nmol l−1).
Identification of NMDA receptor-like complex subunit encoding genes in the Paramecium genome
We scrutinized the Paramecium genome to see whether it contains sequences encoding NMDA subunit proteins. The results suggest that an NMDA-like receptor, with the ligand-binding characteristics of an NMDA receptor-like complex purified from rat brain synaptic membranes (Hui et al., 2009) and also found in some metazoan genomes (see supplementary material Tables S1, S2), is present in Paramecium. Indeed, searches of the current Paramecium tetraurelia genome database indicate that Paramecium harbours at least 20 sequences related to a large family of proteins known as the transmembrane Bax inhibitor 1 protein family (BI1), some of which contain seven putative transmembrane helices (Fig. 6; supplementary material Table S1). In the Paramecium genome we also identified homologues of glycine-binding protein (GlyBP). The Paramecium genome carries at least two different sequences in contrast to the single sequence found in Tetrahymena and in other organisms (Fig. 7; supplementary material Table S2).
DISCUSSION
Some ciliates have been shown to be sensitive to a variety of neurotransmitters and neuropeptides, to which they would not usually be exposed (Le Roith et al., 1980; Nomura et al., 1998). Treatment of Paramecium with a β-adrenergic antagonist affects its behavioural responses to depolarization in a time- and dose-dependent manner, and the shortening of ciliary reversal duration occurs concomitantly with impairment of phagocytic activity (Wyroba, 1989; Ucieklak et al., 1993). In Tetrahymena, the swimming pattern and the rate of phagocytosis are altered in response to nanomolar concentrations of opiate endorphins (Renaud et al., 1991; Renaud et al., 1995). We have previously reported that GABAB receptors modulate swimming behaviour in Paramecium by inhibition of dihydropyridine-sensitive calcium channels via G-proteins (Ramoino et al., 2003) and that the number of GABAB receptors at the plasma membrane is regulated by endocytosis into clathrin-coated and -uncoated vesicles and by recycling back to the cell surface (Ramoino et al., 2005; Ramoino et al., 2006).
Glutamate is an important chemo-attractant for paramecia, probably because it signals the presence of bacteria that are food for this unicellular organism. This observation therefore implies that paramecia are endowed with glutamate sensors, possibly receptors. It is well known that paramecia swim smoothly and quickly in the presence of glutamate, which indicates a relatively hyperpolarized membrane potential (Preston and Usherwood, 1988). The mechanism of hyperpolarization has not been fully elucidated yet but it probably involves the activation of a hyperpolarizing K+ conductance and shares some interesting characteristics with umami taste (Van Houten et al., 2000), as a sustained hyperpolarization induced by glutamate was observed in some rat taste cells (Bigiani et al., 1997). Glutamate is a broad spectrum agonist that binds all the glutamate receptors, so that the effects caused by glutamate may be the result of several events, including the metabotropic receptor-mediated modification of cell metabolism and the ionotropic receptor-induced changes of cation balance (Nakanishi et al., 1994; Traynelis et al., 2010). Therefore, the respective roles that the different glutamate receptors exert in controlling Paramecium functions remain a challenging issue. As to NMDA receptors, this question can be feasibly addressed through the use of selective NMDA receptor agonists and antagonists.
Evidence is accumulating to suggest the presence and functional roles of NMDA receptors in invertebrates. They have been implicated in insect and crustacean neuromuscular transmission (Ultsch et al., 1993; Feinstein et al., 1998), in insect hormone production (Chiang et al., 2002), in neuroendocrine function in Ciona (D'Aniello et al., 2003) and in synaptic activity in the leech (Grey et al., 2009). Moreover, NMDA receptors mediate learning and memory in Drosophila (Wu et al., 2007; Xia et al., 2005) and the honeybee, Apis mellifera (Si et al., 2004), while their role in synaptic plasticity in Caenorhabditis elegans is still controversial (Kano et al., 2008; Rose et al., 2005). Disrupting NMDA receptor function prevents long-term potentiation and leads to changes in learning and memory in Aplysia (Ezzeddine and Glanzman, 2003; Murphy and Glanzman, 1997) and Lymnaea (Rosenegger and Lukowiak, 2010). In addition, an immunocytochemical study reported a specific localization of the GluN1 subunit in dissociated neurons, the nematocytes and epithelial cells of the hypostomal region, as well as in the tentacle cells of the freshwater polyp Hydra vulgaris (Cnidaria, Hydrozoa), one of the first species to develop a nervous system (Scappaticci et al., 2004). Biochemical and behavioural experiments have provided strong evidence for the presence of NMDA receptors in hydra tissue and for their involvement in hydra feeding behaviour (Pierobon et al., 2001; Pierobon et al., 2004), nematocyst discharge in the tentacles (Scappaticci and Kass-Simon, 2008) and electrical tentacle activity (Kay and Kass-Simon, 2009). An NMDA-like receptor has also been described in the ciliated protozoon T. pyriformis (Fillingham et al., 2002). It was demonstrated that this NMDA receptor plays a crucial role in the perception of chemoeffectors (Nam et al., 2007) and that its stimulation induces an up to threefold increase of intracellular Ca2+ (Nam et al., 2009). It was found that 1 mmol l−1 NMDA functions as a repellent, whereas NMDA at 10 μmol l−1 and 10 nmol l−1 functions as a strong attractant, and that 10 μmol l−1 NMDA-induced chemotaxis and intracellular Ca2+ increase are suppressed by both U73122, an inhibitor of phospholipase C activity, and wortmannin, an inhibitor of phosphatidylinositol-3-kinase (Nam et al., 2009).
The major novelty of the present investigation is that Paramecium is able to sense and respond to the NMDA present in the environment by modifying its swimming behaviour. Indeed, in the absence of external Mg2+, NMDA+glycine causes marked functional changes in Paramecium movements and this action is enhanced by membrane depolarization. Addition of K+ at a high concentration to the medium elicits membrane depolarization, thus causing backward swimming through the opening of voltage-dependent Ca2+ channels in the ciliary membrane (Oami and Takahashi, 2002). NMDA affects the behavioural response to membrane depolarization by increasing backward swimming duration. These changes were relieved by the selective NMDA receptor channel blocker MK801, indicative of the involvement of NMDA receptors in the observed effects. Notably, the modification of Paramecium swimming was also counteracted by D-AP5 or by DCKA, selective antagonists of the glutamate-binding sites located at the GluN2 subunits and of the glycine-binding sites at the GluN1 subunits, respectively. Our findings imply that the co-presence of the two agonists is required for NMDA-induced reversal of swimming direction. Hence, NMDA alone (i.e. in the absence of glycine) or glycine alone (i.e. in the absence of NMDA) produced little or no change in Paramecium movement. d-Serine, a glial-derived endogenous ligand for the glycine-binding site of NMDA receptors in mammals (Mothet et al., 2000; Oliet and Mothet, 2009; Schell et al., 1997), behaved similar to glycine thus strengthening the role of this binding site in the machinery of the NMDA-like receptors in Paramecium.
The above-mentioned NMDA-induced changes were observed in the absence of external Mg2+, an ionic condition widely used to force NMDA receptor activation. Accordingly, in our experiments the introduction of Mg2+ abolished the effects of NMDA. NMDA receptors are channels permeable to both Na+ and Ca2+ (Ascher and Nowak, 1986; MacDermott et al., 1986; Mayer and Westbrook, 1987), and usually blocked by Mg2+ (Ault et al., 1980; Nowak et al., 1984). In particular, GluN2-containing receptors are Ca2+ permeant and highly sensitive to Mg2+ (Paoletti and Neyton, 2007), while GluN3-containing receptors are to Na+-permeable and Mg2+-insensitive ion channels (Chatterton et al., 2002). Therefore, our results with Mg2+, along with the Ca2+ dependency of the effect, indicate the presence of GluN2 receptor subunits in the Paramecium NMDA-like receptor.
With regard to the GluN2 subunit, the blockade of NMDA-induced changes in swimming behaviour by Zn2+ and ifenprodil implies the co-presence of the GluN2A and GluN2B subunits (Neyton and Paoletti, 2006). This condition can be suggestive of a receptor assembled in a heterotrimeric fashion (GluN1/GluN2A/GluN2B) although, on the basis of the present results, the presence of two different receptor populations (GluN1/GluN2A and GLUN1/GluN2B) cannot be ruled out.
In apparent contrast with our hypothesis, however, searches of the available Paramecium genome database did not produce sequences with homology matches to this ionotropic glutamate receptor family, but revealed the existence of several homologous sequences of the BI-1-like protein family as well as of the NMDA receptor-like complex, the GlyBP. In mammals, the BI-1 family consists of at least six members: TMBIM1/RECS1, TMBIM2/FAIM2, TMBIM3/GBP (also known as GRINA, glutamate receptor, ionotropic, N-methyl d-aspartate-associated protein 1), TMBIM4/GAAP, TMBIM5/GHITM and TMBIM6/TEGT (see supplementary material Table S1). GlyBP is a receptor protein that differs, in terms of length and amino acidic sequence, from the classic GluN subunits but is able to assemble with the glycine/TCP-BP protein, the CPP-BP, and the phencycline-binding protein in mammalian brain synaptosomal membranes to express an NMDA receptor-like complex, with binding properties similar to those of classic NMDA receptors (Kumar et al., 1998). Indeed, the NMDA-like receptors elicit Ca2+-dependent responses similar to those observed for classic NMDA receptors (Michaelis, 1998), which can be prevented by classic NMDA receptor antagonists (Kumar et al., 1998; Michaelis, 1998).
In conclusion, these results provide evidence that NMDA-like receptors, functionally resembling those identified in mammals, are present in the single-celled organism Paramecium and also suggest that the glutamatergic NMDA or NMDA-like system is an early evolved, phylogenetically old mechanism.
MATERIALS AND METHODS
Cells and culture conditions
Experiments were carried out on P. primaurelia, stock 90, cultured at 25°C in lettuce medium (pH 6.9) inoculated with Enterobacter aerogenes (Sonneborn, 1970). Cells were harvested in the late log phase of growth.
Cell movement analysis
Paramecia were transferred from culture medium into an adaptation solution containing 1 mmol l−1 CaCl2, 4 mmol l−1 KCl, 4 mmol l−1 NaCl and 1 mmol l−1 Hepes (pH 7.2) and allowed to equilibrate for 30 min. Then, they were transferred into a recording camera (internal size: 21×14×3 mm) containing the indicated concentrations of drugs in the adaptation solution. Responses to drugs were determined by acquiring cell-swimming behaviour through an infrared video camera that recorded the swimming of a small sample of protozoa, i.e. one to five individuals at the same time. Protozoan movement was digitally recorded for 60 s at 4 frames s−1. Records were analysed by means of image-analysis software (IToolTrack, e-magine IT s.r.l., Genoa, Italy) to reconstruct each individual path.
CCR induction
Cells were transferred from culture medium into the adaptation solution for 30 min and then to a bath containing the indicated concentrations of drugs in the test solution (40 mmol l−1 KCl, 1 mmol l−1 CaCl2, 4 mmol l−1 NaCl, 1 mmol l−1 Hepes, pH 7.2). The presence of high KCl in the test solution depolarizes the cell membrane, triggering ciliary reversal and backward swimming. Responses to drugs were determined by transferring individual cells with a micropipette into the test solution. Cell responses were recorded at low power magnification (12×), and then the duration of backward swimming was scored using a stopwatch.
Tests were carried out on 15–20 cells and were repeated on three to five different occasions over several weeks.
Drugs used
The drugs used were as follows: NMDA (1–200 μmol l−1), glycine (1–100 μmol l−1), d-serine (1–100 μmol l−1), MK-801 (1 μmol l−1), D-AP5 (10–200 μmol l−1), CGS19755 (10–40 μmol l−1), DCKA (1 μmol l−1), ZnCl2 (100 nmol l−1), ifenprodil (100 nmol l−1 to 10 μmol l−1), MgCl2 (0.5–3.0 mmol l−1), EGTA (1 mmol l−1) and N-methylglucamine (8 mmol l−1). MK-801, D-AP5, CGS19755, DCKA and ifenprodil were purchased from Tocris Bioscience (Bristol, UK). NMDA, glycine, d-serine, N-methylglucamine and all other chemicals (unless otherwise specified) were obtained from Sigma Chemical Co. (St Louis, MO, USA). Drugs were dissolved in milli-Q water.
Statistical analysis
Differences between means (±s.e.m.) were determined using Student's t-test (GraphPad Prism, GraphPad, San Diego, CA, USA). Statistical tests were performed on raw data but, to emphasize any changes in the cell responses to test solutions, backward swimming durations were normalized to control (40 mmol l−1 KCl) values (taking the control as 100 s).
Sequence analysis
TBlastN and BlastP searches (Altschul et al., 1997) using protein sequences of selected vertebrate, invertebrate and plant glutamate receptors were conducted on the genomic and protein databases of P. tetraurelia [Paramecium Genomics, http://paramecium.cgm.cnrs-gif.fr/] and of Tetrahymena thermophila [The TIGR Tetrahymena thermophila Genome Project, http://www.ciliate.org]. Similar searches were also performed using as queries the relative sequences of the mammalian NMDA receptor-like complex proteins. Multiple sequence alignments were performed using M-coffee (Edgar, 2004) and/or ClustalW [http://www.ebi.ac.uk/Tools/clustalw]. All the sequences used in the sequence alignments are described in supplementary material Tables S1 and S2. The putative membrane-spanning alpha helices were assigned using TMHMM software (http://www.cbs.dtu.dk/services/TMHMM).
Acknowledgements
The authors are grateful to Mrs Maura Agate for her excellent secretarial assistance.
FOOTNOTES
Funding
This research received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.
References
Competing interests
The authors declare no competing financial interests.