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Keywords: Open source
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Journal Articles
VISION – an open-source software for automated multi-dimensional image analysis of cellular biophysics
Open AccessIn collection:
Imaging
Florian Weber, Sofiia Iskrak, Franziska Ragaller, Jan Schlegel, Birgit Plochberger, Erdinc Sezgin, Luca A. Andronico
Journal:
Journal of Cell Science
J Cell Sci (2024) 137 (20): jcs262166.
Published: 23 October 2024
...Florian Weber; Sofiia Iskrak; Franziska Ragaller; Jan Schlegel; Birgit Plochberger; Erdinc Sezgin; Luca A. Andronico ABSTRACT Environment-sensitive probes are frequently used in spectral and multi-channel microscopy to study alterations in cell homeostasis. However, the few open-source packages...
Includes: Supplementary data
Journal Articles
In collection:
Imaging
Journal:
Journal of Cell Science
J Cell Sci (2022) 135 (10): jcs259511.
Published: 17 May 2022
...-edge microscopy technologies permit the routine acquisition of 3D datasets, there is currently a limited number of open-source software packages to analyse such images. Here, we describe General Image Analysis of Nuclei-based Images (GIANI; https://djpbarry.github.io/Giani), new software...
Includes: Supplementary data
Journal Articles
Guillaume Mougeot, Tristan Dubos, Frédéric Chausse, Emilie Péry, Katja Graumann, Christophe Tatout, David E. Evans, Sophie Desset
Journal:
Journal of Cell Science
J Cell Sci (2022) 135 (7): jcs258986.
Published: 14 April 2022
... interdisciplinary research between computer scientists and biologists. 3D nucleus Deep learning 3D microscopy images 3D segmentation Image dataset Open source Centre National de la Recherche Scientifique http://dx.doi.org/10.13039/501100004794 Institut National de la Santé et de la...
Includes: Supplementary data
Journal Articles
In collection:
Imaging
David Miguel Susano Pinto, Mick A. Phillips, Nicholas Hall, Julio Mateos-Langerak, Danail Stoychev, Tiago Susano Pinto, Martin J. Booth, Ilan Davis, Ian M. Dobbie
Journal:
Journal of Cell Science
J Cell Sci (2021) 134 (19): jcs258955.
Published: 6 October 2021
... desirable to have a solution that is scalable to complex systems and that is translatable between components from different manufacturers. Here we report Python-Microscope, a free and open-source Python library for high-performance control of arbitrarily complex and scalable custom microscope systems...
Includes: Supplementary data