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Journal Articles

GIANI – open-source software for automated analysis of 3D microscopy images

In collection:
Imaging , Tools in Cell Biology
David J. Barry, Claudia Gerri, Donald M. Bell, Rocco D'Antuono, Kathy K. Niakan
Journal: Journal of Cell Science
J Cell Sci (2022) 135 (10): jcs259511.
https://doi.org/10.1242/jcs.259511
Published: 17 May 2022
...-edge microscopy technologies permit the routine acquisition of 3D datasets, there is currently a limited number of open-source software packages to analyse such images. Here, we describe General Image Analysis of Nuclei-based Images (GIANI; https://djpbarry.github.io/Giani), new software...
View article titled, GIANI – <span class="search-highlight">open</span>-<span class="search-highlight">source</span> software for automated analysis of 3D microscopy images
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Includes: Supplementary data
Journal Articles

Deep learning ­– promises for 3D nuclear imaging: a guide for biologists

In collection:
Imaging , Exploring the Nucleus , Tools in Cell Biology
Guillaume Mougeot, Tristan Dubos, Frédéric Chausse, Emilie Péry, Katja Graumann, Christophe Tatout, David E. Evans, Sophie Desset
Journal: Journal of Cell Science
J Cell Sci (2022) 135 (7): jcs258986.
https://doi.org/10.1242/jcs.258986
Published: 14 April 2022
.... W. and Carpenter , A. E. ( 2021 ). Open-source deep-learning software for bioimage segmentation . Mol. Biol. Cell 32 , 823 - 829 . 10.1091/mbc.E20-10-0660 Moen , E. , Bannon , D. , Kudo , T. , Graf , W. , Covert , M. and Van Valen , D. ( 2019...
View article titled, Deep learning ­– promises for 3D nuclear imaging: a guide for biologists
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Includes: Supplementary data
Journal Articles

Python-Microscope – a new open-source Python library for the control of microscopes

In collection:
Imaging , Tools in Cell Biology
David Miguel Susano Pinto, Mick A. Phillips, Nicholas Hall, Julio Mateos-Langerak, Danail Stoychev, Tiago Susano Pinto, Martin J. Booth, Ilan Davis, Ian M. Dobbie
Journal: Journal of Cell Science
J Cell Sci (2021) 134 (19): jcs258955.
https://doi.org/10.1242/jcs.258955
Published: 6 October 2021
... desirable to have a solution that is scalable to complex systems and that is translatable between components from different manufacturers. Here we report Python-Microscope, a free and open-source Python library for high-performance control of arbitrarily complex and scalable custom microscope systems...
View article titled, Python-Microscope – a new <span class="search-highlight">open</span>-<span class="search-highlight">source</span> Python library for the control of microscopes
Open the PDF for Python-Microscope – a new <span class="search-highlight">open</span>-<span class="search-highlight">source</span> Python library for the control of microscopes in another window
Includes: Supplementary data