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1-4 of 4
Keywords: Fiji
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Journal Articles
In collection:
Imaging
Luke Sorensen, Adam Humenick, Sabrina S. B. Poon, Myat Noe Han, Narges S. Mahdavian, Matthew C. Rowe, Ryan Hamnett, Estibaliz Gómez-de-Mariscal, Peter H. Neckel, Ayame Saito, Keith Mutunduwe, Christie Glennan, Robert Haase, Rachel M. McQuade, Jaime P. P. Foong, Simon J. H. Brookes, Julia A. Kaltschmidt, Arrate Muñoz-Barrutia, Sebastian K. King, Nicholas A. Veldhuis, Simona E. Carbone, Daniel P. Poole, Pradeep Rajasekhar
Journal:
Journal of Cell Science
J Cell Sci (2024) 137 (20): jcs261950.
Published: 30 October 2024
... Analysis Toolbox (GAT), an image analysis tool designed for characterization of enteric neurons and their neurochemical coding using two-dimensional images of GI wholemount preparations. GAT is developed in Fiji, has a user-friendly interface, and offers rapid and accurate segmentation via custom deep...
Includes: Supplementary data
Journal Articles
In collection:
Imaging
Joanna W. Pylvänäinen, Romain F. Laine, Bruno M. S. Saraiva, Sujan Ghimire, Gautier Follain, Ricardo Henriques, Guillaume Jacquemet
Journal:
Journal of Cell Science
J Cell Sci (2023) 136 (4): jcs260728.
Published: 23 February 2023
... processes. Although multiple methods and tools exist to correct images post acquisition, performing drift correction of three-dimensional (3D) videos using open-source solutions remains challenging and time consuming. Here, we present a new tool developed for ImageJ or Fiji called Fast4DReg that can quickly...
Includes: Supplementary data
Journal Articles
In collection:
Imaging
Journal:
Journal of Cell Science
J Cell Sci (2022) 135 (10): jcs259511.
Published: 17 May 2022
... provided that the original work is properly attributed. Summary: General Image Analysis of Nuclei-based Images (GIANI) is a new plugin for the popular FIJI platform, designed for the automated analysis of 3D microscopy images of a wide range of sample types. 3D FIJI Image analysis Open...
Includes: Supplementary data
Journal Articles
In collection:
Cell migration
Journal:
Journal of Cell Science
J Cell Sci (2020) 133 (8): jcs238964.
Published: 28 April 2020
... be affected by experimental treatments or during regular turnover, necessitating a tool that is able to detect even subtle differences in podosomal properties. Here, we present a Fiji-based macro code termed ‘Poji’ (‘podosome analysis by Fiji’), which serves as an easy-to-use tool to characterize a variety...
Includes: Supplementary data