In the fission yeast Schizosaccharomyces pombe, both RNAi machinery and RNAi-independent factors mediate transcriptional and posttranscriptional silencing and heterochromatin formation. Here, we show that the silencing of reporter genes at major native heterochromatic loci (centromeres, telomeres, mating-type locus and rDNA regions) and an artificially induced heterochromatin locus is alleviated in a fission yeast hsp90 mutant, hsp90-G84C. Also, H3K9me2 enrichment at heterochromatin regions, especially at the mating-type locus and subtelomeres, is compromised, suggesting heterochromatin assembly defects. We further discovered that Hsp90 is required for stabilization or assembly of the RNA-induced transcriptional silencing (RITS) and Argonaute siRNA chaperone (ARC) RNAi effector complexes, the RNAi-independent factor Fft3, the shelterin complex subunit Poz1 and the Snf2/HDAC-containing repressor complex (SHREC). Our ChIP data suggest that Hsp90 regulates the efficient recruitment of the methyltransferase/ubiquitin ligase complex CLRC by shelterin to chromosome ends and targeting of the SHREC and Fft3 to mating type locus and/or rDNA region. Finally, our genetic analyses demonstrated that increased heterochromatin spreading restores silencing at subtelomeres in the hsp90-G84C mutant. Thus, this work uncovers a conserved factor critical for promoting RNAi-dependent and -independent heterochromatin assembly and gene silencing through stabilizing multiple effectors and effector complexes.

Author contributions

Conceptualization: Y.W., Q.-W.J.; Validation: X.L.; Formal analysis: L.S., W.-Z.L., X.H., Y.W., Q.-W.J.; Investigation: L.S., X.L., W.-Z.L., Y.-Y.Y.; Data curation: L.S.; Writing - original draft: Y.W., Q.-W.J.; Supervision: X.H., Y.W., Q.-W.J.; Project administration: Y.W., Q.-W.J.; Funding acquisition: Q.-W.J.

Funding

This work was supported by the National Natural Science Foundation of China [grant numbers 30871376, 31171298, 31371360 and 31671411 to Q.-W.J.].

Data availability

All ChIP-seq sequencing data sets generated in this study were submitted to NCBI GEO database under the accession number GSE140617.

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