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1-9 of 9
Keywords: Transcriptome
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Journal Articles
In collection:
Zebrafish as a Disease Model
Helen Eachus, Lara Oberski, Jack Paveley, Irina Bacila, John-Paul Ashton, Umberto Esposito, Fayaz Seifuddin, Mehdi Pirooznia, Eran Elhaik, Marysia Placzek, Nils P. Krone, Vincent T. Cunliffe
Journal:
Disease Models & Mechanisms
Dis Model Mech (2023) 16 (9): dmm050141.
Published: 2 October 2023
... the brain methylomes and brain transcriptomes of adult wild-type and GR-mutant zebrafish, and identified 249 differentially methylated regions (DMRs) that are regulated by GR. These include a cluster of CpG sites within the first intron of fkbp5 , the gene encoding the glucocorticoid-inducible heat shock...
Includes: Supplementary data
Journal Articles
In collection:
Developmental Disorders
Roberto Oleari, Antonella Lettieri, Stefano Manzini, Alyssa Paganoni, Valentina André, Paolo Grazioli, Marco Busnelli, Paolo Duminuco, Antonio Vitobello, Christophe Philippe, Varoona Bizaoui, Helen L. Storr, Federica Amoruso, Fani Memi, Valeria Vezzoli, Valentina Massa, Peter Scheiffele, Sasha R. Howard, Anna Cariboni
Journal:
Disease Models & Mechanisms
Dis Model Mech (2023) 16 (3): dmm049996.
Published: 28 March 2023
... novel biological mechanisms and genetic determinants underlying GD. Here, we combined bioinformatic analyses of immortalized and primary embryonic GnRH neuron transcriptomes with exome sequencing from GD patients to identify candidate genes implicated in the pathogenesis of GD. Among differentially...
Includes: Supplementary data
Journal Articles
In collection:
Advanced in vitro models
Venkatram Yellapragada, Nazli Eskici, Yafei Wang, Shrinidhi Madhusudan, Kirsi Vaaralahti, Timo Tuuri, Taneli Raivio
Journal:
Disease Models & Mechanisms
Dis Model Mech (2022) 15 (8): dmm049436.
Published: 16 August 2022
... characterization and transcriptomic properties of gnrh neurons derived from human stem cells . Endocrinology 162 , bqab120 . 10.1210/endocr/bqab120 Kumamoto , T. and Hanashima , C. ( 2017 ). Evolutionary conservation and conversion of Foxg1 function in brain development . Dev. Growth...
Includes: Supplementary data
Journal Articles
In collection:
Zebrafish as a Disease Model
Karin Tuschl, Richard J. White, Chintan Trivedi, Leonardo E. Valdivia, Stephanie Niklaus, Isaac H. Bianco, Chris Dadswell, Ramón González-Méndez, Ian M. Sealy, Stephan C. F. Neuhauss, Corinne Houart, Jason Rihel, Stephen W. Wilson, Elisabeth M. Busch-Nentwich
Journal:
Disease Models & Mechanisms
Dis Model Mech (2022) 15 (6): dmm044594.
Published: 15 June 2022
... is a hallmark of hypermanganesemia with dystonia 2, an inherited manganese transporter defect caused by mutations in SLC39A14. To identify novel potential targets of manganese neurotoxicity, we performed transcriptome analysis of slc39a14 −/− mutant zebrafish that were exposed to MnCl 2 . Differentially...
Includes: Supplementary data
Journal Articles
In collection:
Rat as a Disease Model
Fumihiko Takeuchi, Yi-Qiang Liang, Masato Isono, Michiko Tajima, Zong Hu Cui, Yoko Iizuka, Takanari Gotoda, Toru Nabika, Norihiro Kato
Journal:
Disease Models & Mechanisms
Dis Model Mech (2021) 14 (5): dmm048090.
Published: 19 May 2021
... are unique genetic models of severe hypertension and cardiovascular complications. By integrating whole-genome sequencing, transcriptome profiling, genome-wide linkage scans (maximum n =1415), fine congenic mapping (maximum n =8704), pharmacological intervention and comparative analysis with transcriptome...
Includes: Supplementary data
Journal Articles
In collection:
Advanced in vitro models
Carina Lund, Venkatram Yellapragada, Sanna Vuoristo, Diego Balboa, Sara Trova, Cecile Allet, Nazli Eskici, Kristiina Pulli, Paolo Giacobini, Timo Tuuri, Taneli Raivio
Journal:
Disease Models & Mechanisms
Dis Model Mech (2020) 13 (3): dmm040105.
Published: 13 March 2020
... in the neuronal progenitor pool led to upregulation of 37 genes expressed both in progenitors and in TdTomato-expressing GnRH neurons, which suggests upstream regulation of these genes by FGF8 signaling during GnRH neuron differentiation. These results illustrate how hPSC-derived human GnRH neuron transcriptomic...
Includes: Supplementary data
Journal Articles
Georg W. Otto, Pamela J. Kaisaki, Francois Brial, Aurélie Le Lay, Jean-Baptiste Cazier, Richard Mott, Dominique Gauguier
Journal:
Disease Models & Mechanisms
Dis Model Mech (2019) 12 (7): dmm038539.
Published: 15 July 2019
... phenotypes. eQTL Diabetes mellitus Goto-Kakizaki rat SNP Spontaneously hypertensive rat Systems genetics Transcriptome Wellcome Trust 075491/Z/04, 057733 Seventh Framework Programme 10.13039/100011102 HEALTH-F4-2010-241504 Fondation pour la Recherche Médicale...
Includes: Supplementary data
Journal Articles
Susan M. Motch Perrine, Meng Wu, Nicholas B. Stephens, Divya Kriti, Harm van Bakel, Ethylin Wang Jabs, Joan T. Richtsmeier
Journal:
Disease Models & Mechanisms
Dis Model Mech (2019) 12 (5): dmm038513.
Published: 30 May 2019
... revealed transcriptomic changes in mandibular bone at embryonic day 16.5 (E16.5), highlighting increased expression of genes related to osteoclast differentiation and dysregulated genes active in bone mineralization. Increased osteoclastic activity was corroborated by TRAP assay and in situ hybridization...
Includes: Supplementary data
Journal Articles
Nathan V. Welham, Changying Ling, John A. Dawson, Christina Kendziorski, Susan L. Thibeault, Masaru Yamashita
Journal:
Disease Models & Mechanisms
Dis Model Mech (2015) 8 (3): 311–321.
Published: 1 March 2015
... is hindered by a paucity of data and is therefore often generalized from research conducted in skin and other mucosal systems. Here, using a previously validated rat injury model, expression microarray technology and an empirical Bayes analysis approach, we generated a VF-specific transcriptome dataset...