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Keywords: Transcriptome
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Journal Articles
Journal: Development
Development (2024) 151 (4): dev202256.
Published: 13 February 2024
... lineages, the Spiralia, for example, have long been neglected. In order to remedy this shortcoming, we have produced a detailed developmental transcriptome for the bivalve mollusk Mytilus galloprovincialis , and have expanded the list of experimental protocols available for this species. Our high-quality...
Includes: Supplementary data
Journal Articles
Journal Articles
Journal Articles
Journal: Development
Development (2019) 146 (10): dev173328.
Published: 28 May 2019
... vertebrate organogenesis. However, little is known about the cellular heterogeneity of the mesenchymal progenitors in early limb buds that ultimately contribute to the chondrogenic condensations prefiguring the skeleton. We combined flow cytometric and transcriptome analyses to identify the molecular...
Includes: Supplementary data
Journal Articles
In collection:
Neural development
Journal: Development
Development (2019) 146 (12): dev174284.
Published: 1 April 2019
... single cell RNA sequencing to profile transcriptomes of dissociated cells from the diencephalon of E12.5 mouse embryos. We identified the divergence of different progenitors, intermediate progenitors, and emerging neurons. By mapping the identified cell groups to their spatial origins, we characterized...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2019) 146 (4): dev166017.
Published: 15 February 2019
.... However, the cellular and molecular basis of tail regeneration in amphioxus remains largely ill-defined. We confirmed that the tail regeneration of amphioxus Branchiostoma japonicum is a vertebrate-like epimorphosis process. We performed transcriptome analysis of tail regenerates, which provided many...
Includes: Supplementary data
Journal Articles
In collection:
Human development
Journal: Development
Development (2019) 146 (2): dev169474.
Published: 29 January 2019
...; Majlinda Lako ABSTRACT The scarcity of embryonic/foetal material as a resource for direct study means that there is still limited understanding of human retina development. Here, we present an integrated transcriptome analysis combined with immunohistochemistry in human eye and retinal samples from 4 to 19...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (10): dev162867.
Published: 17 May 2018
... organism. This interest has been further fueled by the advent of high-throughput transcriptomic analyses that provide virtual mountains of data. Here, we present N ematostella vectensis Embryogenesis and Regeneration Transcriptomics (NvERTx), a platform for comparing gene expression during embryogenesis...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (18): 3375–3387.
Published: 15 September 2017
... a comprehensive Ciona notochord transcriptome. We identify 1364 genes with enriched expression and extensively validate the results by in situ hybridization. These genes are highly enriched for Gene Ontology terms related to the extracellular matrix, cell adhesion and cytoskeleton. Orthologs of 112 of the Ciona...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (15): 2784–2797.
Published: 1 August 2017
... Mouse Transcriptome Dosage compensation of X-linked genes is a crucial epigenetic event that occurs at around the peri-implantation stages to allow successful development of female mice. The X inactive-specific transcript ( Xist ) gene encodes a long noncoding RNA that is monoallelically...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (9): 1584–1587.
Published: 1 May 2017
...J. Gray Camp; Barbara Treutlein Innovative methods designed to recapitulate human organogenesis from pluripotent stem cells provide a means to explore human developmental biology. New technologies to sequence and analyze single-cell transcriptomes can deconstruct these ‘organoids’ into constituent...
Journal Articles
Journal: Development
Development (2017) 144 (7): 1221–1234.
Published: 1 April 2017
... of mouse embryonic stem cell identity upon differentiation immediately follows collapse of the naïve pluripotency transcription factor circuitry and precedes upregulation of lineage-specific factors. ES cells Rex1 Epiblast Methylome Pluripotency Transcriptome Epiblast cells, founders...
Includes: Supplementary data
Journal Articles
In collection:
Plant development
Journal: Development
Development (2017) 144 (1): 163–172.
Published: 1 January 2017
... . Plant Cell   25 , 2798 - 2812 . 10.1105/tpc.113.112227 Feng , B. , Lu , D. , Ma , X. , Peng , Y. , Sun , Y. , Ning , G. and Ma , H. ( 2012 ). Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development . Plant J.   72 , 612 - 624 . 10.1111...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2016) 143 (7): 1217–1227.
Published: 1 April 2016
... 2016. Published by The Company of Biologists Ltd 2016 Summary: Using laser capture micro-dissection followed by array hybridization, the temporal and spatial gene expression changes occurring during rice embryogenesis are captured. Embryogenesis Rice Transcriptome Gene expression...
Includes: Supplementary data
Journal Articles
Journal Articles
Journal: Development
Development (2014) 141 (24): 4649–4655.
Published: 15 December 2014
... for correspondence ( irie@bs.s.u-tokyo.ac.jp ; saizo@cdb.riken.jp ) Competing interests The authors declare no competing financial interests. © 2014. Published by The Company of Biologists Ltd 2014 Body plan Evo-devo Evolution Hourglass model Phylotype Transcriptome Animals...
Journal Articles
Journal: Development
Development (2014) 141 (19): 3683–3696.
Published: 1 October 2014
... identified. We have undertaken a transcriptome analysis of mouse limb tendon cells that were isolated at different stages of development based on scleraxis ( Scx ) expression. Microarray comparisons allowed us to establish a list of genes regulated in tendon cells during mouse limb development...
Includes: Supplementary data
Journal Articles
Journal Articles
Journal: Development
Development (2014) 141 (11): 2325–2330.
Published: 1 June 2014
... requires the identification of crucial differentially expressed control genes and, ideally, the determination of the complete transcriptomes of each individual cell type. Here, we have analyzed the transcriptomes of six major tissues dissected from mid-gestational (TS12) mouse embryos. Approximately one...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2013) 140 (22): 4633–4644.
Published: 15 November 2013
... potential of the subgranular zone (SGZ) of the hippocampal dentate gyrus is likely to be regulated by molecular cues arising from its complex heterogeneous cellular environment. Through transcriptome analysis using laser microdissection coupled with DNA microarrays, in combination with analysis of genome...
Includes: Supplementary data