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Keywords: Single-cell RNA-seq
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Journal Articles
Journal:
Development
Development (2024) 151 (23): dev202524.
Published: 29 November 2024
... to the native tissue. Hair cells Hearing loss Human inner ear organoids Otic Single-cell RNA-seq Ministerio de Ciencia, Innovación y Universidades PRE2021-097774 PID2020-117662GB-I00 Agencia Estatal de Investigación The inner ear is a sensory organ required...
Journal Articles
Journal:
Development
Development (2024) 151 (22): dev203142.
Published: 20 November 2024
... sequencing in the large yellow croaker provides insights into the development of spermatogonial stem cells, potentially impacting further conservation and culture of spermatogonial stem cells in teleosts. Seasonal spermatogenesis Single-cell RNA-seq Spermatogonial stem cells Large yellow croaker...
Includes: Supplementary data
Journal Articles
Journal:
Development
Development (2023) 150 (11): dev201280.
Published: 1 June 2023
... theory of dynamical systems and high-dimensional transcriptomic data of differentiating cells by studying statistical signatures of linear instability, encoded in a time-varying covariance matrix. Differentiation Bifurcation Single-cell RNA-seq Pseudotime Waddington National Science...
Includes: Supplementary data
Journal Articles
Ran Gu, Shuwen Zhang, Subbroto Kumar Saha, Yu Ji, Kurt Reynolds, Moira McMahon, Bo Sun, Mohammad Islam, Paul A. Trainor, YiPing Chen, Ying Xu, Yang Chai, Diana Burkart-Waco, Chengji J. Zhou
Journal:
Development
Development (2022) 149 (14): dev200533.
Published: 22 July 2022
... Summary: Single-cell genomic approaches reveal transcriptomic atlases of midfacial primordia, and a mesenchymal gene regulatory network modulated by Wls during midline facial formation and fusion. Wnt Pax Frontonasal hypoplasia Midline facial clefts Single-cell RNA-seq Gene regulatory network...
Includes: Supplementary data
Journal Articles
Xiaodun Yang, Jeffrey C. Raum, Junil Kim, Reynold Yu, Juxiang Yang, Gabriella Rice, Changhong Li, Kyoung-Jae Won, Diana E. Stanescu, Doris A. Stoffers
Journal:
Development
Development (2022) 149 (13): dev200432.
Published: 29 June 2022
... developing pancreas have not been examined. To address this knowledge gap, we performed PDX1 ChIP-seq and single-cell RNA-seq using fetal human pancreata. We integrated our datasets with published datasets and revealed the dynamics of PDX1 binding and potential cell lineage-specific PDX1-bound genes...
Includes: Supplementary data
Journal Articles
Naoki Takada, Masaki Takasugi, Yoshiki Nonaka, Tomonori Kamiya, Kazuaki Takemura, Junko Satoh, Shinji Ito, Kosuke Fujimoto, Satoshi Uematsu, Kayo Yoshida, Takashi Morita, Hiroaki Nakamura, Akiyoshi Uezumi, Naoko Ohtani
Journal:
Development
Development (2022) 149 (3): dev199443.
Published: 3 February 2022
.... Takeda Science Foundation http://dx.doi.org/10.13039/100007449 Japan Society for the Promotion of Science http://dx.doi.org/10.13039/501100001691 19H04002 20K15695 Cellular senescence Intermuscular adipose tissue PDGFRα + mesenchymal progenitors Sarcopenia Single-cell RNA...
Includes: Supplementary data
Journal Articles
Journal:
Development
Development (2020) 147 (7): dev179051.
Published: 12 April 2020
... . 10.1038/s41467-018-07771-0 Chen , G. , Ning , B. and Shi , T. ( 2019 ). Single-cell RNA-Seq technologies and related computational data analysis . Front. Genet. 10 , 317 . 10.3389/fgene.2019.00317 Chera , S. , Baronnier , D. , Ghila , L. , Cigliola , V...
Journal Articles
Sandra Ruiz García, Marie Deprez, Kevin Lebrigand, Amélie Cavard, Agnès Paquet, Marie-Jeanne Arguel, Virginie Magnone, Marin Truchi, Ignacio Caballero, Sylvie Leroy, Charles-Hugo Marquette, Brice Marcet, Pascal Barbry, Laure-Emmanuelle Zaragosi
Journal:
Development
Development (2019) 146 (20): dev177428.
Published: 23 October 2019
... et al., 2018 ; Plasschaert et al., 2018 ; Vieira Braga et al., 2019 ), providing a first panorama of human airway cell diversity and lineages that we are extending here, after analyzing single-cell RNA-seq data in fresh human airway epithelial tissues and throughout an experiment in 3D in vitro...
Includes: Supplementary data
Journal Articles
Journal:
Development
Development (2019) 146 (17): dev178103.
Published: 9 September 2019
... position and new candidate genes for circuit formation with special emphasis on ipsilaterally projecting RGCs. Neurogenesis Retinal development Single-cell RNA-seq Retinal ganglion cell Axon guidance Cell-fate specification Mouse Understanding how diverse neuronal cell types emerge...
Includes: Supplementary data
Journal Articles
Journal:
Development
Development (2018) 145 (6): dev163162.
Published: 20 March 2018
... transcription factors and the establishment of primed and active enhancers. Deletion of Jmjd3 , a histone demethylase for H3K27me3, at the pancreatic progenitor stage impaired the efficiency of endocrine cell fate transition and thereafter islet formation. Curiously, single-cell RNA-seq revealed...
Includes: Supplementary data