... cell types is transfated beginning with early endoderm. Delta-Notch Gene regulatory network Regeneration Reprogramming scRNA-seq Sea urchin National Institutes of Health RO1 HD 14483 T32 HD040372 National Science Foundation http://dx.doi.org/10.13039/100000001 IOS...

... and differential bulk RNA-seq increase the resolution of the sea urchin posterior gut gene regulatory network draft for the cells expressing the ParaHox gene Sp-Pdx1 . Gene regulatory networks Sea urchin Embryo Gut scRNA-seq ATAC-seq RNA-seq Pdx1 Stazione Zoologica Anton Dohrn http...

....). Open Access funding provided by Ohio State University. Deposited in PMC for immediate release. Data availability scRNA-seq datasets are available in Gene Expression Omnibus (GEO) under accession numbers GSE135406 and GSE242796 . Gene–cell matrices for scRNA-seq data for libraries from...

..., distribution and reproduction in any medium provided that the original work is properly attributed. Highlighted Article: Longitudinal scRNA-seq analysis of human inner ear organoids identifies supporting cells as possible precursors of hair cells and upregulation of previously unrecognized early...

..., consistent with the original report from which the scRNA-seq dataset on the Pten KO short-distance axon-regenerating RGCs was obtained ( Jacobi et al., 2022 ) ( Fig. S1 ). Modest upregulation of only one αRGC marker Spp1 in the C33/C40 Pten KD long-distance axon-regenerating is consistent with Pten KO...

.... Inductive germline Primordial germ cell (PGC) Vasa Nanos Sea star Sea urchin Cell fates scRNA-seq National Institutes of Health http://dx.doi.org/10.13039/100000002 1R35GM140897 1P20GM119943 National Science Foundation http://dx.doi.org/10.13039/100000001 IOS-1923445...

...-nuclei analysis identified regulatory genes of cell differentiation in poplar apex, establishing a comparison between a model annual herbaceous and a woody perennial plant species. Populus Vascular development scRNA-seq Developmental trajectory Shoot apex Cell differentiation U.S...

... specification, subdivision and development of the chicken forelimbs. EMT LPM Limb Chicken scRNA-seq Transcriptomics Australian Research Council http://dx.doi.org/10.13039/501100000923 DP190100890 Monash University http://dx.doi.org/10.13039/501100001779 The lateral...

... decisions. Previous knowledge derived from our sc-qPCR and scRNA-seq profiling of purified neural crest cells combined here with the innovative label-free, non-isolation cell profiling of the entire branchial arches provided confidence in mapping cell type composition ( Figs 1 and 3 ). These results also...

...Abdull J. Massri; Laura Greenstreet; Anton Afanassiev; Alejandro Berrio; Gregory A. Wray; Geoffrey Schiebinger; David R. McClay ABSTRACT Using scRNA-seq coupled with computational approaches, we studied transcriptional changes in cell states of sea urchin embryos during development to the larval...

.... Limb regeneration Xenopus Apical-ectodermal-ridge scRNA-Seq Ex vivo limbs Amphibian limb regeneration relies on a specialized wound epidermis (also known as the apical-epithelial-cap, AEC) that forms on the amputation plane and has been characterized primarily as a tissue...

... and involvement of alx3 in skeletal cell morphology and differentiation timing affecting neurocranium shape. Zebrafish Craniofacial skeleton Neurocranium scRNA-seq Differentiation Neural crest cells Cartilage Bone Alx The vertebrate head skeleton has many cartilaginous and bony elements...

... attributed. Highlighted Article: The transcription-factor Runx1 orchestrates the injury response of many cardiac cell types, balancing collagen and fibrin deposition and clearance, as well as affecting myocyte proliferation and survival in zebrafish. Heart Regeneration Runx1 ScRNA-seq...

... and their associated gene expression profiles, identifying co-regulated genes that mediate a temporal programme of neuronal subtype specification. Spinal cord Neural development Neural tube ScRNA-seq Single cell transcriptomics European Research Council 10.13039/100010663 742138 Human...