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Keywords: Image analysis
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Journal Articles
Journal: Development
Development (2024) 151 (1): dev201955.
Published: 2 January 2024
... biology and image analysis that are helping overcome this problem. We highlight the opportunities presented by these advances and discuss opportunities and limitations in applying them to developmental model systems. * Authors for correspondence ( mattias.malaguti@ed.ac.uk ; sally.lowell@ed.ac.uk...
Journal Articles
Journal Articles
Journal: Development
Development (2021) 148 (18): dev199433.
Published: 16 September 2021
... Summary: Live imaging is an intrinsically interdisciplinary endeavour, dependent on advances in several disciplines including embryo culture, microscopy hardware and computational analysis, any one of which can become limiting. Image analysis Imaging developmental processes Microscopy Mouse...
Journal Articles
Journal: Development
Development (2021) 148 (18): dev198952.
Published: 7 September 2021
... boundaries (also known as segmented images). These segmented images along with their original images are the pre-requisite inputs in QuantifyPolarity GUI for further image analysis. All three methods displayed a similar trend in which average polarity magnitude gradually increases from 24 to 32 hAPF...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2021) 148 (18): dev199616.
Published: 7 September 2021
... goals and re-evaluate how we share data and collaborate. A.H. thanks J.-B. Lugagne and N. Lawrence for insightful discussions on DL-based image analysis and acknowledges the support of Benjamin Simons and his lab. H.G.Y. thanks Juan Caicedo for his generous DL mentorship. The authors thank Martin...
Journal Articles
Journal: Development
Development (2018) 145 (6): dev156778.
Published: 20 March 2018
...   43 , 765 - 783 . 10.1111/1475-4983.00148 Heller , D. , Hoppe , A. , Restrepo , S. , Gatti , L. , Tournier , A. L. , Tapon , N. , Basler , K. and Mao , Y. ( 2016 ). EpiTools: an open-source image analysis toolkit for quantifying epithelial growth Dynamics...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2018) 145 (6): dev156778.
Published: 20 March 2018
.... Summary: A novel method for automated and quantitative assessment of complex cell shapes, including features such as protrusion number and amplitude, is demonstrated for Arabidopsis , Drosophila and in silico cells. Cell shape Cellular Potts model Image analysis Pavement cells Arabidopsis...
Includes: Supplementary data
Journal Articles
In collection:
Plant development
Journal: Development
Development (2017) 144 (23): 4386–4397.
Published: 1 December 2017
...-piece shapes, highly deviating from such classical forms. We investigate the topology of developing Arabidopsis leaves composed solely of pavement cells. Image analysis of around 50,000 cells reveals a clear and unique topological signature, deviating from previously studied epidermal tissues...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (7): 1350–1361.
Published: 1 April 2017
..., and is driven by cell intercalation, cell shape changes, and oriented cell divisions at the posterior germband. Anterior germband cells also divide during axis elongation. We developed image analysis and pattern-recognition methods to track dividing cells from confocal microscopy movies in a generally...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2017) 144 (7): 1350–1361.
Published: 1 April 2017
..., and is driven by cell intercalation, cell shape changes, and oriented cell divisions at the posterior germband. Anterior germband cells also divide during axis elongation. We developed image analysis and pattern-recognition methods to track dividing cells from confocal microscopy movies in a generally...
Includes: Supplementary data
Journal Articles
In collection:
Plant development
Journal: Development
Development (2016) 143 (18): 3417–3428.
Published: 15 September 2016
... of Biologists Ltd 2016 Summary: A novel strategy for the analysis of complex biological 2D shapes is presented and used to analyse the architecture and developmental trajectory of different Arabidopsis leaves. Multiscale morphometrics Image analysis Leaf Heteroblasty 2D:4D finger length...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2014) 141 (11): 2339–2348.
Published: 1 June 2014
... Drosophila wing Growth Image analysis In vivo imaging Mathematical analysis Morphogenesis Attempts to immobilize Drosophila larvae for imaging have already been performed. They consist of either squeezing ( Ghannad-Rezaie et al., 2012 ; Nienhaus et al., 2012 ) or anesthetizing ( Füger et...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2013) 140 (23): 4740–4750.
Published: 1 December 2013
... interests. 15 3 2013 13 9 2013 © 2013. Published by The Company of Biologists Ltd 2013 Epithelium Image analysis Morphogenesis Palate Tissue tectonics Mouse Tissue elongation is an important process in morphogenesis. As well as directly shaping tissues...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2012) 139 (17): 3071–3080.
Published: 1 September 2012
... in collaborations between biologists, computer scientists, mathematicians and physicists. In this Primer we present a glossary of image analysis terms to aid biologists and briefly discuss the importance of robust image analysis in developmental studies. Once the image has been acquired, image compression methods...
Journal Articles
Journal Articles
Journal: Development
Development (1987) 100 (4): 629–635.
Published: 1 August 1987
... 1987 secondary palate hyaluronate image analysis mouse computer extracellular matrix Hyaluronate (HA) is the major extracellular matrix component of the secondary palatal shelves around the time of shelf reorientation, representing about 60–65% of the extracellular matrix material...