... al., 2017 ; Guo and Zheng, 2017 ; Teschendorff and Feinberg, 2021 ; Yampolskaya et al., 2023 ; Smart and Zilman, 2023 ). Classical Hopfield networks are well-established models for dynamical systems that encode combinatorial attractor states (patterns) through the interactions of their components...

... as perturbations in the dynamical system that preserve its orbits. We demonstrate that this framework allows for the prediction of molecular mechanisms governing tempo, through both numerical and analytical methods. Our exploration includes two case studies: a generic network featuring coupled production...

... of a single cell to the entire inner cell mass. Waddington landscape Dynamical systems Mouse blastocyst Department of Atomic Energy, Government of India http://dx.doi.org/10.13039/501100001502 RTI4006 Simons Foundation http://dx.doi.org/10.13039/100000893 287975...

... profiles downstream of Hh in different organs during Drosophila development. Hh signaling Drosophila Morphogens Computational modeling Dynamical systems Ministerio de Ciencia e Innovación http://dx.doi.org/10.13039/501100004837 Consejo Superior de Investigaciones...