... clusters did not significantly decrease when new clusters were added (inflection point). For each cluster, gene ontology (GO) term enrichment was calculated using a Fisher's exact test and the R package topGO on the GO terms identified from comparing the transcriptome with the UniProt database (all...

... by The Company of Biologists Ltd 2014 Imprinted genes Database Genetic and epigenetic information Imprinting disorder Genomic imprinting, a complex epigenetic phenomenon whereby gene expression occurs in a parent-of-origin specific manner in various cell or tissue types, has an essential role...

... the data have been used to address problems in developmental biology and provides a primer for those wishing to use the database in their own research. The starting point for using GUDMAP is the gene expression database homepage ( http://www.gudmap.org/gudmap/pages/database_homepage.html ) ( Fig. 1...

... part of the S. mediterranea database (SmedDb; http://planaria.neuro.utah.edu ). Sixty-nine percent of the cDNAs analyzed share similarities with sequences deposited in GenBank and dbEST. The remaining gene transcripts failed to match sequences in other organisms, even though a large number...

... the mRNAs in the fertilized eggs of the ascidian, Halocynthia roretzi . The cDNAs of the ascidian embryo were sequenced, and the localization of individual mRNA was examined in staged embryos by whole-mount in situ hybridization. The data obtained were stored in the database MAGEST ( http://www.genome.ad.jp...