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Keywords: ATAC-seq
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Journal Articles
Journal: Development
Development (2024) 151 (20): dev203017.
Published: 10 October 2024
... regulation during the development of holometabolous insects, in particular Drosophila melanogaster . Conversely, functional genomics resources and databases in other insect lineages are scarce. To provide a new platform to study gene regulation in insects, we generated ATAC-seq for the first time during...
Includes: Supplementary data
Journal Articles
Journal: Development
Development (2024) 151 (16): dev202278.
Published: 29 August 2024
... chromatin accessibility ATAC-seq data; and (3) interactions directionality obtained from differential bulk RNA sequencing following knockdown of the transcription factor Sp-Pdx1, a key regulator of gut patterning in sea urchins. Combining these datasets, we draft the GRN for the hindgut Sp-Pdx1 -positive...
Includes: Supplementary data
Journal Articles
Journal: Development
Series: REVIEW COMMONS TRANSFER
Development (2022) 149 (11): dev200793.
Published: 10 June 2022
... resources for the amphipod crustacean Parhyale hawaiensis , facilitating the exploration of gene regulatory evolution using this emerging research organism. We use Omni-ATAC-seq to identify accessible chromatin genome-wide across a broad time course of Parhyale embryonic development. This time course...
Includes: Supplementary data
Journal Articles
Journal Articles
Journal: Development
Development (2019) 146 (11): dev173427.
Published: 3 June 2019
.../user-licence-1-1/ Summary: Multiple genome-wide approaches reveal that Npas4l functions as a master regulator by directly inducing a group of transcription factor genes that are crucial for hematoendothelial specification. ATAC-seq ChIP-seq Angioblast Cloche Endothelial cell...
Includes: Supplementary data