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Keywords: ATAC-seq
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Journal Articles
Joan Pallarès-Albanell, Laia Ortega-Flores, Tòt Senar-Serra, Antoni Ruiz, Josep F. Abril, Maria Rossello, Isabel Almudi
Journal:
Development
Development (2024) 151 (20): dev203017.
Published: 10 October 2024
... regulation during the development of holometabolous insects, in particular Drosophila melanogaster . Conversely, functional genomics resources and databases in other insect lineages are scarce. To provide a new platform to study gene regulation in insects, we generated ATAC-seq for the first time during...
Includes: Supplementary data
Journal Articles
Danila Voronov, Periklis Paganos, Marta S. Magri, Claudia Cuomo, Ignacio Maeso, Jose Luis Gómez-Skarmeta, Maria Ina Arnone
Journal:
Development
Development (2024) 151 (16): dev202278.
Published: 29 August 2024
... chromatin accessibility ATAC-seq data; and (3) interactions directionality obtained from differential bulk RNA sequencing following knockdown of the transcription factor Sp-Pdx1, a key regulator of gut patterning in sea urchins. Combining these datasets, we draft the GRN for the hindgut Sp-Pdx1 -positive...
Includes: Supplementary data
Journal Articles
In collection:
Review Commons Transfers
Journal:
Development
Series: REVIEW COMMONS TRANSFER
Development (2022) 149 (11): dev200793.
Published: 10 June 2022
... resources for the amphipod crustacean Parhyale hawaiensis , facilitating the exploration of gene regulatory evolution using this emerging research organism. We use Omni-ATAC-seq to identify accessible chromatin genome-wide across a broad time course of Parhyale embryonic development. This time course...
Includes: Supplementary data
Journal Articles
In collection:
Cardiovascular development and regeneration
,
Chromatin and epigenetics
,
Stem cells & regeneration
Yingxi Cao, Yu Xia, Joseph J. Balowski, Jianhong Ou, Lingyun Song, Alexias Safi, Timothy Curtis, Gregory E. Crawford, Kenneth D. Poss, Jingli Cao
Journal:
Development
Development (2022) 149 (4): dev200133.
Published: 18 February 2022
...://journals.biologists.com/dev/article-lookup/doi/10.1242/dev.200133 Data availability The RNA-seq and ATAC-seq datasets have been deposited at GEO under accession number GSE89444M . Funding This work was supported by a Rudin Foundation Fellowship to Y.X., by National Institutes of Health (NIH) grants...
Includes: Supplementary data
Journal Articles
In collection:
Cardiovascular development and regeneration
Michele Marass, Arica Beisaw, Claudia Gerri, Francesca Luzzani, Nana Fukuda, Stefan Günther, Carsten Kuenne, Sven Reischauer, Didier Y. R. Stainier
Journal:
Development
Development (2019) 146 (11): dev173427.
Published: 3 June 2019
.../user-licence-1-1/ Summary: Multiple genome-wide approaches reveal that Npas4l functions as a master regulator by directly inducing a group of transcription factor genes that are crucial for hematoendothelial specification. ATAC-seq ChIP-seq Angioblast Cloche Endothelial cell...
Includes: Supplementary data