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Fabian J. Theis
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Journal Articles

CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data

In collection:
Focus on techniques and resources
Gabriele Lubatti, Marco Stock, Ane Iturbide, Mayra L. Ruiz Tejada Segura, Melina Riepl, Richard C. V. Tyser, Anna Danese, Maria Colomé-Tatché, Fabian J. Theis, Shankar Srinivas, Maria-Elena Torres-Padilla, Antonio Scialdone
Journal: Development
Development (2023) 150 (11): dev201264.
https://doi.org/10.1242/dev.201264
Published: 8 June 2023
View article titled, CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data
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Includes: Supplementary data
Journal Articles

Concepts and limitations for learning developmental trajectories from single cell genomics

Sophie Tritschler, Maren Büttner, David S. Fischer, Marius Lange, Volker Bergen, Heiko Lickert, Fabian J. Theis
Journal: Development
Development (2019) 146 (12): dev170506.
https://doi.org/10.1242/dev.170506
Published: 27 June 2019
View article titled, Concepts and limitations for learning developmental trajectories from single cell genomics
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Journal Articles

Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis

Aimée Bastidas-Ponce, Sophie Tritschler, Leander Dony, Katharina Scheibner, Marta Tarquis-Medina, Ciro Salinno, Silvia Schirge, Ingo Burtscher, Anika Böttcher, Fabian J. Theis, Heiko Lickert, Mostafa Bakhti
Journal: Development
Development (2019) 146 (12): dev173849.
https://doi.org/10.1242/dev.173849
Published: 17 June 2019
View article titled, Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis
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Includes: Supplementary data
Journal Articles

Quantification of regenerative potential in primary human mammary epithelial cells

Jelena R. Linnemann, Haruko Miura, Lisa K. Meixner, Martin Irmler, Uwe J. Kloos, Benjamin Hirschi, Harald S. Bartsch, Steffen Sass, Johannes Beckers, Fabian J. Theis, Christian Gabka, Karl Sotlar, Christina H. Scheel
Journal: Development
Development (2015) 142 (18): 3239–3251.
https://doi.org/10.1242/dev.123554
Published: 15 September 2015
View article titled, Quantification of regenerative potential in primary human mammary epithelial cells
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Includes: Supplementary data
Journal Articles

miR-335 promotes mesendodermal lineage segregation and shapes a transcription factor gradient in the endoderm

Dapeng Yang, Dominik Lutter, Ingo Burtscher, Lena Uetzmann, Fabian J. Theis, Heiko Lickert
Journal: Development
Development (2014) 141 (3): 514–525.
https://doi.org/10.1242/dev.104232
Published: 1 February 2014
View article titled, miR-335 promotes mesendodermal lineage segregation and shapes a transcription factor gradient in the endoderm
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Includes: Supplementary data