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Barbara Treutlein
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Journal Articles

Mapping chromatin modifications at the single cell level

In collection:
Chromatin and epigenetics
Connor H. Ludwig, Lacramioara Bintu
Journal: Development
Development (2019) 146 (12): dev170217.
https://doi.org/10.1242/dev.170217
Published: 27 June 2019
View article titled, Mapping chromatin modifications at the single cell level
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Journal Articles

The evolving concept of cell identity in the single cell era

Samantha A. Morris
Journal: Development
Development (2019) 146 (12): dev169748.
https://doi.org/10.1242/dev.169748
Published: 27 June 2019
View article titled, The evolving concept of cell identity in the single cell era
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Journal Articles

A periodic table of cell types

Bo Xia, Itai Yanai
Journal: Development
Development (2019) 146 (12): dev169854.
https://doi.org/10.1242/dev.169854
Published: 27 June 2019
View article titled, A periodic table of cell types
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Journal Articles

Recording development with single cell dynamic lineage tracing

Aaron McKenna, James A. Gagnon
Journal: Development
Development (2019) 146 (12): dev169730.
https://doi.org/10.1242/dev.169730
Published: 27 June 2019
View article titled, Recording development with single cell dynamic lineage tracing
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Journal Articles

Concepts and limitations for learning developmental trajectories from single cell genomics

Sophie Tritschler, Maren Büttner, David S. Fischer, Marius Lange, Volker Bergen, Heiko Lickert, Fabian J. Theis
Journal: Development
Development (2019) 146 (12): dev170506.
https://doi.org/10.1242/dev.170506
Published: 27 June 2019
View article titled, Concepts and limitations for learning developmental trajectories from single cell genomics
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Journal Articles

Exploring single cells in space and time during tissue development, homeostasis and regeneration

Urs Mayr, Denise Serra, Prisca Liberali
Journal: Development
Development (2019) 146 (12): dev176727.
https://doi.org/10.1242/dev.176727
Published: 27 June 2019
View article titled, Exploring single cells in space and time during tissue development, homeostasis and regeneration
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Journal Articles

Single cell analyses of development in the modern era

Allon M. Klein, Barbara Treutlein
Journal: Development
Development (2019) 146 (12): dev181396.
https://doi.org/10.1242/dev.181396
Published: 27 June 2019
View article titled, Single cell analyses of development in the modern era
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Journal Articles

Communication codes in developmental signaling pathways

Pulin Li, Michael B. Elowitz
Journal: Development
Development (2019) 146 (12): dev170977.
https://doi.org/10.1242/dev.170977
Published: 27 June 2019
View article titled, Communication codes in developmental signaling pathways
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Journal Articles

A transcriptomic roadmap to α- and β-cell differentiation in the embryonic pancreas

Léon van Gurp, Mauro J. Muraro, Tim Dielen, Lina Seneby, Gitanjali Dharmadhikari, Gerard Gradwohl, Alexander van Oudenaarden, Eelco J. P. de Koning
Journal: Development
Development (2019) 146 (12): dev173716.
https://doi.org/10.1242/dev.173716
Published: 24 June 2019
View article titled, A transcriptomic roadmap to α- and β-cell differentiation in the embryonic pancreas
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Includes: Supplementary data
Journal Articles

Neuro-mesodermal progenitors (NMPs): a comparative study between pluripotent stem cells and embryo-derived populations

Shlomit Edri, Penelope Hayward, Wajid Jawaid, Alfonso Martinez Arias
Journal: Development
Development (2019) 146 (12): dev180190.
https://doi.org/10.1242/dev.180190
Published: 24 June 2019
View article titled, Neuro-mesodermal progenitors (NMPs): a comparative study between pluripotent stem cells and embryo-derived populations
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Includes: Supplementary data
Journal Articles

Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis

Aimée Bastidas-Ponce, Sophie Tritschler, Leander Dony, Katharina Scheibner, Marta Tarquis-Medina, Ciro Salinno, Silvia Schirge, Ingo Burtscher, Anika Böttcher, Fabian J. Theis, Heiko Lickert, Mostafa Bakhti
Journal: Development
Development (2019) 146 (12): dev173849.
https://doi.org/10.1242/dev.173849
Published: 17 June 2019
View article titled, Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis
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Includes: Supplementary data
Journal Articles

The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution

Hong Li, Kenneth L. Jones, Joan E. Hooper, Trevor Williams
Journal: Development
Development (2019) 146 (12): dev174888.
https://doi.org/10.1242/dev.174888
Published: 17 June 2019
View article titled, The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution
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Includes: Supplementary data
Journal Articles

Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development

In collection:
Cardiovascular development and regeneration
Guang Li, Lei Tian, William Goodyer, Eric J. Kort, Jan W. Buikema, Adele Xu, Joseph C. Wu, Stefan Jovinge, Sean M. Wu
Journal: Development
Development (2019) 146 (12): dev173476.
https://doi.org/10.1242/dev.173476
Published: 14 June 2019
View article titled, Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development
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Includes: Supplementary data
Journal Articles

A cellular atlas of Pitx2- dependent cardiac development

Matthew C. Hill, Zachary A. Kadow, Lele Li, Tien T. Tran, Joshua D. Wythe, James F. Martin
Journal: Development
Development (2019) 146 (12): dev180398.
https://doi.org/10.1242/dev.180398
Published: 14 June 2019
View article titled, A cellular atlas of Pitx2- dependent cardiac development
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Includes: Supplementary data
Journal Articles

Lgr5 + stem and progenitor cells reside at the apex of a heterogeneous embryonic hepatoblast pool

In collection:
Stem cells & regeneration
Nicole Prior, Christopher J. Hindley, Fabian Rost, Elena Meléndez, Winnie W. Y. Lau, Berthold Göttgens, Steffen Rulands, Benjamin D. Simons, Meritxell Huch
Journal: Development
Development (2019) 146 (12): dev174557.
https://doi.org/10.1242/dev.174557
Published: 12 June 2019
View article titled, Lgr5 + stem and progenitor cells reside at the apex of a heterogeneous embryonic hepatoblast pool
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Includes: Supplementary data
Journal Articles

Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk

Alexander N. Combes, Belinda Phipson, Kynan T. Lawlor, Aude Dorison, Ralph Patrick, Luke Zappia, Richard P. Harvey, Alicia Oshlack, Melissa H. Little
Journal: Development
Development (2019) 146 (12): dev178673.
https://doi.org/10.1242/dev.178673
Published: 12 June 2019
View article titled, Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
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Includes: Supplementary data
Journal Articles

Live imaging of ERK signalling dynamics in differentiating mouse embryonic stem cells

In collection:
Stem cells & regeneration
Julia Deathridge, Vlatka Antolović, Maddy Parsons, Jonathan R. Chubb
Journal: Development
Development (2019) 146 (12): dev172940.
https://doi.org/10.1242/dev.172940
Published: 3 June 2019
View article titled, Live imaging of ERK signalling dynamics in differentiating mouse embryonic stem cells
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Includes: Supplementary data
Journal Articles

Stochastic single cell migration leads to robust horizontal cell layer formation in the vertebrate retina

Rana Amini, Anastasia A. Labudina, Caren Norden
Journal: Development
Development (2019) 146 (12): dev173450.
https://doi.org/10.1242/dev.173450
Published: 24 May 2019
View article titled, Stochastic single cell migration leads to robust horizontal cell layer formation in the vertebrate retina
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Includes: Supplementary data
Journal Articles

QuBiT: a quantitative tool for analyzing epithelial tubes reveals unexpected patterns of organization in the Drosophila trachea

Ran Yang, Eric Li, Yong-Jae Kwon, Madhav Mani, Greg J. Beitel
Journal: Development
Development (2019) 146 (12): dev172759.
https://doi.org/10.1242/dev.172759
Published: 16 May 2019
View article titled, QuBiT: a quantitative tool for analyzing epithelial tubes reveals unexpected patterns of organization in the Drosophila trachea
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Includes: Supplementary data
Journal Articles

Differential RA responsiveness directs formation of functionally distinct spermatogonial populations at the initiation of spermatogenesis in the mouse

In collection:
Reproductive biology , Stem cells & regeneration
Ellen K. Velte, Bryan A. Niedenberger, Nicholas D. Serra, Anukriti Singh, Lorena Roa-DeLaCruz, Brian P. Hermann, Christopher B. Geyer
Journal: Development
Development (2019) 146 (12): dev173088.
https://doi.org/10.1242/dev.173088
Published: 13 May 2019
View article titled, Differential RA responsiveness directs formation of functionally distinct spermatogonial populations at the initiation of spermatogenesis in the mouse
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Includes: Supplementary data