ABSTRACT
We have assessed the importance of a melanocyte-specific DNase I hypersensitive site and matrix attachment region situated 15 kb upstream of the mouse tyrosinase gene by analysis in transgenic mice. Transgenes containing all, part, or none of this region linked to the tyrosinase promoter and human tyrosinase cDNA were introduced into genetically albino mice, and pigmentation and transgene message levels were analyzed in the resulting transgenic lines. The effect of the upstream region was to enhance significantly gene expression in melanocytes, and to provide position-independent expression of the transgene. Two exceptions to complete position indepen-dence were seen; these lines displayed a mosaic expression pattern in which the transgene was expressed fully in some melanocyte clones but less so in others, resulting in trans-verse stripes of colours ranging from near white to dark grey. Unexpectedly, pigmentation in the eye of all trans-genic lines containing the upstream region was non-uniform, in that the neural-crest-derived melanocytes of the choroid and anterior iris contained significantly more pigment than those derived from the optic cup (retinal pigment epithelium and posterior iris). Transgenes con-taining a small part or none of the upstream region were expressed poorly and in a position-dependent manner; of those lines that were visibly pigmented, expression was equal in the neural crest and optic-cup-derived cells of the eye. Mice with transgenes containing DNA sequences encompassing the hypersensitive site but lacking most of the matrix attachment region were, on average, poorer expressors than those containing the entire upstream region; the highest expressing line of this series, however, had a pigmentation level similar to the lines with the full upstream region. Thus, full transcriptional enhancement activity may lie within the segment containing the hyper-sensitive site, but position-independent expression may require the flanking matrix attachment region containing sequences.
INTRODUCTION
Tyrosinase is the key enzyme of melanin biosynthesis. Its gene is expressed in all pigmented melanocytes, including those of neural crest origin (residing in the skin, choroid and internal organs) and the optic-cup-derived melanocytes of the retinal pigment epithelium (RPE). We are interested in defining the elements required for the establishment of an active tyrosinase chromosomal domain in melanocytes, to understand better the mechanisms involved in this aspect of gene regulation, as well as to help in the identification of trans-acting factors important in melanocyte-specific gene expression and differentiation.
The identification of cis-acting sequences important in higher order gene control has been approached primarily by the functional analysis of candidate sequences in transgenes randomly integrated into the genome of mice or cultured cells. High level expression of the genes, which is proportional to the number of copies integrated, is considered to indicate that sequences required for autonomous establishment of an open chromatin structure and for insulation of the transgene from neighbouring chromatin or regulatory elements, are included in the construct. The first of such elements isolated was the locus control region (LCR) of the β-globin gene cluster (Grosveld et al., 1987), and elements with similar properties from a number of other genes have been identified (Greaves et al., 1989; Abe and Oshima, 1990; Bonifer et al., 1990; Greer et al., 1990; Chamberlain et al., 1991; Aronow et al., 1992).
Studies of the tyrosinase gene regulatory elements using transgenic mice have shown that 270 bp of the promoter are sufficient for expression in skin and eye melanocytes (Beermann et al., 1992) and that the expression of the transgene, although lower than that of the endogenous gene, roughly recapitulates its developmental timing. Position inde-pendence of expression in this and in other studies using longer tyrosinase promoters (up to 6 kb) with the tyrosinase or het-erologous cDNAs (Tanaka et al., 1990; Yokoyama et al., 1990; Bradl et al., 1991a; Klüppel et al., 1991) was not specifically addressed; however, visual analysis of coat color suggested that expression levels often did not correspond to copy number. In addition, some transgenic lines (non-founders) displayed a mosaic expression in which melanocyte clones in the coat were pigmented to different degrees (Bradl et al., 1991b; Takeuchi et al., 1993), clearly a variegating type position effect. The three analyzed transgenic lines derived from microinjection of a yeast artificial chromosome (YAC) encompassing 235 kb of the tyrosinase gene (80 kb of the coding region and 155 kb of upstream sequences) showed position-independent transgene expression at levels comparable to that of the endogenous gene (Schedl et al., 1993), suggesting that all elements necessary for higher order gene control are located within these limits.
A sequence at 15 kb upstream from the first exon of the tyrosinase gene is hypersensitive to DNase I in melanocytes and has in vitro nuclear matrix attachment activity (Porter et al., 1991). It is located within a region removed by rearrange-ment from the rest of the tyrosinase gene in the variegating mutation of the tyrosinase locus, chinchilla-mottled (cm) (Porter et al., 1991). This autosomal, somatically stable mutation results in light and dark grey stripes on the coat of homozygous mice, which are accounted for by altered tyrosi-nase mRNA levels (a roughly 10-fold difference between the light and darkly pigmented cells, and between the dark cm/cm and wild-type melanocytes). The difference in gene expression between the light and dark cells could be attributed to alternate chromatin conformations of the tyrosinase locus. Thus, the rearrangement of the tyrosinase gene causes aberrant chromatin formation in some clones and reduced expression in all clones (even those with apparently normal chromatin structure). The −15 kb region was hypothesized to encompass a potential regulatory element important in transcriptional enhancement of the tyrosinase gene and/or in the establishment of open chromatin, as it was the only DNase I hypersensitive site within 20 kb of the promoter that was separated from the gene in the cm mutation. That all sequences required for full expression and open chromatin conformation were not present in the immediate vicinity of the coding sequence was concluded independently from the transgenic experiments discussed above.
To address the hypothesis that this region is important in tyrosinase gene control in melanocytes, we generated trans-genic mice containing the tyrosinase promoter, human tyrosi-nase cDNA, and part or all of this −15 kb region. We found that the region imparted high level, position-independent expression in all lines except two, which showed variegating position effects. In addition, we found the region to enhance tyrosinase expression in neural-crest-derived melanocytes, but not in optic-cup-derived melanocytes, indicating the existence of distinct tyrosinase regulatory elements for these two devel-opmental lineages. The sequence was also shown to be hyper-sensitive in melanoma cells, but not in neuroblastoma, liver or brain cells.
MATERIALS AND METHODS
DNase I hypersensitivity analyses
Cell cultures of Neuro-2a and Cloudman S91 (clone M-3) melanoma (both from ATCC) were propagated as recommended by the ATCC. Near confluent cultures were harvested by scraping, and nuclei were isolated and subjected to incremental DNase I (Gibco BRL) diges-tions as previously described (Porter et al., 1991).
Brain and liver were obtained from BALB/c mice. The tissues were minced, washed 3 times in ice-cold SSC/10 mM Tris-HCl pH 7.5 and homogenized in a dounce homogenizer. Nuclei were isolated (after passage through gauze) and DNase I digestions were carried out as above.
For Southern analysis, DNA was digested with EcoRI, separated by gel electrophoresis, blotted to Nytran (Schleicher and Schuell) and probed according to the manufacturer’s directions.
Transgenic mice
All DNA constructs used to generate transgenic mice contain the mouse tyrosinase promoter and human tyrosinase cDNA, and some contain sequences from the −15 kb region of the mouse tyrosinase gene. The promoter was derived from λgTYR101, and the −15 kb region from λgTYR14 (Ruppert et al., 1988). These genomic fragments were derived from the chinchilla allele, which contains a point change in the coding region (Beermann et al., 1992) and exhibits no apparent alteration in the transcript size or level (Halaban et al., 1988). The human cDNA, which includes a polyadenylation signal, was derived from BBTY-1 (Bouchard et al., 1989). The promoter and cDNA in all constructs are identical and consist of a 2.5 kb EcoRI-Sau3A segment of the immediate upstream region of the tyrosinase gene (the Sau3A site is situated 65 bp downstream of the major tran-scription initiation site; Ruppert et al., 1988; Yamamoto et al., 1989) fused through a 21 bp polylinker to the EcoRI fragment of BBTY-1. For UPT, a 3.6 kb EcoRI-HindIII fragment encompassing the −15 kb hypersensitive site was ligated to the EcoRI site (blunt-ended) of the promoter, and for 3PT, a 1 kb AvaII-SstI subfragment of the 3.6 kb fragment was blunt-end ligated to the promoter. 2PT was derived directly from UPT by cutting the final construct at the 5′ end with SstI (which removes all sequences from the 3.6 kb fragment except the 3′ terminal 300 bp). Constructs were digested with XhoI to release the 3′ end of the construct from the vector, and either SmaI (UPT), BamHI (PT), or SstI (3PT and 2PT) to release the 5′ end. The DNA was gel-purified by Geneclean (Bio 101) for injection.
Fertilized mouse oocytes were obtained from superovulated BALB/c females crossed with BALB/c males (for TgUPT5, 6 and 7) or CD-1 males (all remaining lines), and were cultured, injected and implanted using standard methods (Hogan et al., 1986). Positive founders were initially identified by PCR analysis of tail DNA samples from all mice developed to term.
Copy number determination
Tail DNA samples from the progeny of UPT founder mice were digested with EcoRI, and analyzed by Southern blotting using the 3.6 kb EcoRI-HindIII fragment as probe. This gives a 6.1 kb transgene-specific band and a 3.6 kb band from the endogenous sequence (cor-responding to two copies). Additional bands were apparent in most samples, presumably corresponding to partial truncations. DNA from the other lines was digested with PstI (which cuts once in the construct) and probed with the tyrosinase promoter sequence, which recognizes a 12 kb endogenous fragment, a band corresponding to the full length of each construct representing head-to-tail tandem inte-grations, and at least one other band representing the terminal transgene copy and separately integrated copies.
DNA was blotted onto Nytran and hybridized with random primer 32P-labelled DNA probes. Blots were exposed to either preflashed X-ray film at −70°C with intensifying screens, or to non-flashed film without screens. The autoradiograms were quantitated using a Zeineh hand-held scanning densitometer (AAB).
Quantitation of transgene expression
RNA was isolated from the dorsal skin of 7-8 day transgenic offspring of founders crossed with BALB/c mice by the method of Chom-czynski and Sacchi (1987), and 50 μg of each sample were used for analysis by RNase protection. RNA probes used for the assays were radiolabelled with [32P]CTP (using an RNA transcription kit, Strata-gene), and corresponded to the antisense strand encompassing the 3′ terminal 275 bp (HaeIII site to terminus) of the human tyrosinase cDNA (BBTY-1) including 65 bp of vector sequence (39 of which are also present at the 3′ end of the transgene) and, as an internal control, the antisense 3′ terminal 188 bp (TaqI site to terminus) of the mouse tyrosinase cDNA (Terao et al., 1989).
Assays were carried out by standard methods (Ausubel et al., 1993), using approximately 10,000 cts/minute of each probe simultaneously. Products of the RNase digestions were separated by denaturing gel electrophoresis (6% polyacrylamide/7 M urea), and autoradiograms were prepared and quantitated as described for the copy number deter-mination analyses. An average of the ratio of the human tyrosinase protected fragment (transgene) to that of the mouse (endogenous) was taken of two separate assays and normalized to line UPT3 (1 transgene copy).
Histology
All tissue samples were fixed in 10% buffered formalin and embedded in paraffin. 4 μm sections were stained with hematoxylin and eosin for microscopic examination.
RESULTS
Cell type specificity of the −15 kb hypersensitive site
The −15 kb region of the tyrosinase gene was examined in a number of cell types for hypersensitivity to DNase I. As seen in Fig. 1, neither liver, nor brain nor the neuroblastoma cell line Neuro-2a was hypersensitive at −15 kb. The pigmented melanoma cell line Cloudman S91 (clone M-3) was hypersen-sitive at this point, as expected.
DNase I hypersensitivity of −15 kb region in different cell types. (A) Nuclei were prepared from the melanoma cell line clone M-3 (Cloudman S91), BALB/c brain, liver and the neuroblastoma cell line Neuro-2a, and digested with increasing concentrations of DNaseI. Purified DNA was restricted with EcoRI, separated electrophoretically, transferred to nylon and hybridized with a probe adjacent to the hypersensitive site (0.9 kb EcoRI-XbaI fragment from the 3.6 kb EcoRI-HindIII fragment (see Fig. 2) for clone M-3; the 3′ adjacent 0.65 kb XbaI fragment for the remaining samples). (B) DNA blots that showed no sub-band corresponding to the hypersensitive site were stripped and rehybridized with a probe from the second intron of the ribosomal protein S16 gene (Wagner and Perry, 1985) as a control for the DNase I digestion. The sub-band observed maps upstream of the first exon. Molecular weight markers are indicated for each blot (kb).
DNase I hypersensitivity of −15 kb region in different cell types. (A) Nuclei were prepared from the melanoma cell line clone M-3 (Cloudman S91), BALB/c brain, liver and the neuroblastoma cell line Neuro-2a, and digested with increasing concentrations of DNaseI. Purified DNA was restricted with EcoRI, separated electrophoretically, transferred to nylon and hybridized with a probe adjacent to the hypersensitive site (0.9 kb EcoRI-XbaI fragment from the 3.6 kb EcoRI-HindIII fragment (see Fig. 2) for clone M-3; the 3′ adjacent 0.65 kb XbaI fragment for the remaining samples). (B) DNA blots that showed no sub-band corresponding to the hypersensitive site were stripped and rehybridized with a probe from the second intron of the ribosomal protein S16 gene (Wagner and Perry, 1985) as a control for the DNase I digestion. The sub-band observed maps upstream of the first exon. Molecular weight markers are indicated for each blot (kb).
Effect of the −15 kb region on expression patterns in transgenic mice
The constructs used to generate transgenic mice are illustrated schematically in Fig. 2. Each transgene contains the identical promoter fragment (2.5 kb upstream from the transcription initiation point of the mouse tyrosinase gene) and human tyrosinase cDNA/polyadenylation signal. The human tyrosi-nase cDNA was used as a reporter gene to allow the level and uniformity of transgene expression to be determined by visual analysis of the pigmentation pattern; quantitative comparison of expression levels was also possible as the transgene message was readily distinguished from that of the endogenous tyrosi-nase gene by RNase protection analysis. The constructs contain the following additional sequences: (1) UPT contains the 3.6 kb EcoRI-HindIII fragment encompassing the hyper-sensitive site and matrix attachment region (MAR) (Porter et al., 1991), (2) 3PT contains the 1 kb AvaII-SstI fragment, which includes the hypersensitive site but lacks most of the MAR, (3) 2PT contains only the 3′ terminal 300 bp of this fragment, and (4) PT contains none of the −15 kb region.
Maps of DNA constructs used to generate transgenic mice. A restriction map of the tyrosinase locus is shown at the top and includes the first exon (solid box), direction and initiation of transcription (wavy arrow) and DNase I hypersensitive sites (strong one at −15 kb, weaker one at −100 bp). Shaded boxes above the −15 kb region indicate those restriction fragments bound to nuclear matrices in vitro (Porter et al., 1991). Each of the transgenes indicated below the locus include 2.5 kb of the region immediately upstream of the first exon, the human tyrosinase cDNA (lined boxes), and various portions of the −15 kb region. A, AvaII; E, EcoRI; H, HindIII; S, SstI; X, XbaI.
Maps of DNA constructs used to generate transgenic mice. A restriction map of the tyrosinase locus is shown at the top and includes the first exon (solid box), direction and initiation of transcription (wavy arrow) and DNase I hypersensitive sites (strong one at −15 kb, weaker one at −100 bp). Shaded boxes above the −15 kb region indicate those restriction fragments bound to nuclear matrices in vitro (Porter et al., 1991). Each of the transgenes indicated below the locus include 2.5 kb of the region immediately upstream of the first exon, the human tyrosinase cDNA (lined boxes), and various portions of the −15 kb region. A, AvaII; E, EcoRI; H, HindIII; S, SstI; X, XbaI.
A representative mouse of each transgenic line generated with the above constructs is shown in Fig. 3. Each of the pigmented mice shown here are genotypically black (an allele of the brown locus) and agouti. None of the mice containing the PT transgene (Fig. 3B) have visibly pigmented coats; however, two (TgPT2 and TgPT4) have ruby-colored eyes and pigmented tail, ears and scrotum. One line out of four generated with the 2PT construct (Fig. 3C), Tg2PT1, is pigmented in all normally pigmented structures, but the level is very low. Lines generated from 3PT (Fig. 3D) are either light grey, non-pigmented or pigmented in a mosaic pattern. The eyes of the two pigmented lines (Tg3PT1 and Tg3PT3) are ruby-colored. In striking contrast, all lines generated from the UPT construct containing the entire 3.6 kb upstream fragment are pigmented (Fig. 3A), with colors ranging from tan (TgUPT3) to black (TgUPT5, 6 and 8). The eyes of each line are black. An additional founder animal that died at birth was also pigmented. Two of the TgUPT lines (1 and 9) have a mosaic coat pattern of stripes. Mice of line TgUPT1 are more highly pigmented overall than those of line TgUPT9, and although some TgUPT1 mice have a distinctive dark grey and white pattern, most have stripes of varying shades of grey. The number of pigmented clones in line TgUPT9 mice is generally much smaller, although this is extremely variable within the line. In addition, the ears of some mice of this line are darkly pigmented, whereas others have no visible ear pigmentation.
Representative mice of all transgenic lines, arranged in order of increasing copy number. Pigmented mice are on a black agouti background, and all mice are of either F1 or F2 generation. TgUPT series, from left to right, lines 3, 7, 4, 9, 1, 5, 6, and 8; TgPT series, lines 8, 5, 3, 4, 7, and 2; (C) Tg2PT series, lines 6, 1, 5, and 7, and (D) Tg3PT series, lines 5, 3, 2, and 1.
Representative mice of all transgenic lines, arranged in order of increasing copy number. Pigmented mice are on a black agouti background, and all mice are of either F1 or F2 generation. TgUPT series, from left to right, lines 3, 7, 4, 9, 1, 5, 6, and 8; TgPT series, lines 8, 5, 3, 4, 7, and 2; (C) Tg2PT series, lines 6, 1, 5, and 7, and (D) Tg3PT series, lines 5, 3, 2, and 1.
The eyes of all pigmented lines were examined histologi-cally to assess the amount and distribution of pigment (Fig. 4). The eyes of the pigmented TgPT and Tg2PT lines, whose transgenes contain little or none of the upstream region, had only a small amount of pigment in the eye, and it was distrib-uted evenly between the choroid, iris and RPE (Fig. 4D,H). The distribution of ocular pigment in every TgUPT line and in the two pigmented Tg3PT lines, however, was very different. Whereas every TgUPT line had significant (typically wild-type) levels of pigmentation in the choroid and anterior half of the iris (which is continuous with the choroid), most lines had no detectable pigmentation of the RPE or posterior iris (which is derived from the retina) (Fig. 4B,F). Line TgUPT1 had an occasional cluster of lightly pigmented cells in the RPE (0-3 clusters of 2-3 cells each, per section), and lines TgUPT6 and 8, with the highest transgene copy numbers, had a moderate but subnormal amount of RPE and posterior iris pigmentation (Fig. 4C,G). The eyes of the pigmented Tg3PT lines were less pigmented than those of any TgUPT line, but the distribution of melanin granules (only in the choroid and anterior iris) was the same (data not shown).
Ocular pigmentation in wild-type and representative transgenic mice. Sections showing choroid and retinal pigment epithelium (A-D) and iris (E-H) of a wild-type pigmented (C/c B/B A/A) mouse (A,E) and hemizygous mice of lines TgUPT5 (B,F), TgUPT8 (C,G) and TgPT4 (D,H). Also shown is a schematic diagram of the relevent features of the mouse eye. c, choroid; a, anterior iris; p, posterior iris; l, lens; cb, ciliary body; i, iris; r, retina. Bar, 50 μm.
Ocular pigmentation in wild-type and representative transgenic mice. Sections showing choroid and retinal pigment epithelium (A-D) and iris (E-H) of a wild-type pigmented (C/c B/B A/A) mouse (A,E) and hemizygous mice of lines TgUPT5 (B,F), TgUPT8 (C,G) and TgPT4 (D,H). Also shown is a schematic diagram of the relevent features of the mouse eye. c, choroid; a, anterior iris; p, posterior iris; l, lens; cb, ciliary body; i, iris; r, retina. Bar, 50 μm.
The approximate level of pigmentation in the ear and scrotum (where the majority of pigmentation results from dermal rather than epidermal melanocytes; Billingham and Silvers, 1960), Harderian gland (a pigmented lacrimal gland), eye structures and coat for all transgenic lines is summarized in Table 1. Harderian gland pigmentation was evaluated histo-logically, but as it is difficult to quantitate, was indicated only as present or absent. Pigment cells in various locations were categorized as being derived from the optic cup (RPE and posterior iris), or from the neural crest (probably all other melanocytes; Billingham and Silvers, 1960). It is immediately evident from these results that a direct correlation exists between the presence of the −15 kb hypersensitive site in the transgene and increased expression of the gene in neural-crest-derived melanocytes. There appears to be little or no effect of the region on optic-cup-derived pigment cell expression, as the highest level of pigmentation seen in either the TgUPT or Tg3PT mice (lines TgUPT6 and 8, with 17 and 19 transgene copies, respectively) is not significantly higher than that seen in the strongest expressing line of the TgPT series (TgPT4, with 23 transgene copies).
Another conclusion that can be drawn from these data is that the expression of the UPT transgene in neural-crest-derived pigment cells in various locations is apparently proportionately normal, whereas that of the TgPT lines is not (in which expression in the ocular and dermal melanocytes is much higher than that in the follicular melanocytes). Melanocytes of the only expressing Tg2PT line are pigmented in apparently correctly pro-portional amounts and the Tg3PT lines, although under-pigmented in the eye, have otherwise proportionate pigmentation. Three TgUPT lines with the highest transgene copy numbers (5, 6 and 8) were bred with strains containing different genetic coat color determinants that act downstream of tyrosinase in the synthesis of pigment. In each case, the transgenes behaved as true phenotypic revertants of albinism. That is, the brown agouti, black agouti and black non-agouti (carried out only on line 8) phenotypes were all comparable to those of wild-type (non-albino) animals with these genetic determinants.
Quantitative analysis of transgene expression
To address the question of position independence (copy number dependence) of transgene expression, and to estimate quantitatively the influence of the upstream region, RNase pro-tection analyses were carried out on RNA from the dorsal skin of 7-8 day offspring of founder mice using both human (transgene) and mouse (endogenous)-specific probes (Fig. 5). An average of the ratio of human:mouse tyrosinase RNA, nor-malized to line TgUPT3, was taken of two experiments and expressed as a function of transgene copy number (Fig. 6).
RNase protection analysis of dorsal skin RNA from hemizygous TgUPT transgenic mice. 50 μg of each sample were hybridized with antisense probes from the 3′ terminus of the human and mouse tyrosinase cDNAs and digested with RNase. The products were run on a 6% polyacrylamide/7 M urea denaturing gel. The probes protect at least two fragments each (approximately 185 and 180 nucleotides for the mouse; and approximately 315 and 300 nucleotides for the human), most likely representing different transcript termination points. The two major transgene-specific transcripts appear to encompass some or all of the vector sequence; TgUPT3 has only the lower of these bands, which is presumably due to the integration of this transgene as a single copy, with unique 3′ adjacent sequences. The RNA used in the last lane (−) was yeast tRNA.
RNase protection analysis of dorsal skin RNA from hemizygous TgUPT transgenic mice. 50 μg of each sample were hybridized with antisense probes from the 3′ terminus of the human and mouse tyrosinase cDNAs and digested with RNase. The products were run on a 6% polyacrylamide/7 M urea denaturing gel. The probes protect at least two fragments each (approximately 185 and 180 nucleotides for the mouse; and approximately 315 and 300 nucleotides for the human), most likely representing different transcript termination points. The two major transgene-specific transcripts appear to encompass some or all of the vector sequence; TgUPT3 has only the lower of these bands, which is presumably due to the integration of this transgene as a single copy, with unique 3′ adjacent sequences. The RNA used in the last lane (−) was yeast tRNA.
Relationship of TgUPT transgene expression to copy number. Transgene expression was quantitated by RNase protection analysis; each point represents an average from two assays of the ratio of the transgene-specific fragment to that of the endogenous tyrosinase gene for a hemizygous representative of each UPT line, normalized to line TgUPT3 (1 copy). Transgene copy number was determined by quantitative Southern blot. Open boxes represent mice with mosaic pigmentation (lines TgUPT1 and 9), the values of which were not used to plot the line of best fit.
Relationship of TgUPT transgene expression to copy number. Transgene expression was quantitated by RNase protection analysis; each point represents an average from two assays of the ratio of the transgene-specific fragment to that of the endogenous tyrosinase gene for a hemizygous representative of each UPT line, normalized to line TgUPT3 (1 copy). Transgene copy number was determined by quantitative Southern blot. Open boxes represent mice with mosaic pigmentation (lines TgUPT1 and 9), the values of which were not used to plot the line of best fit.
The results are consistent with a visual analysis of coat color in that expression of the transgene appears to be directly pro-portional to the transgene copy number for all lines except those exhibiting a mosaic coat color pattern. Analysis of transgene expression levels in some of the TgPT and Tg2PT lines was attempted (including Tg2PT1, the only one with a pigmented coat), but the level was too low to be quantitated. The Tg3PT series was not quantitatively analyzed. The pig-mentation levels of the TgPT, Tg2PT and Tg3PT series mice show, however, that transgene expression does not correlate with copy number (see Table 1).
A comparison of coat colors of mice from different series can also give an indication of relative transgene expression efficiency, and thus of the quantitative effect of the upstream region. TgUPT3 mice have a single transgene copy which is expressed at a level (per copy number) comparable to those of the rest of the series (Fig. 6). Tg2PT1 homozygotes, which have 12 transgene copies, have coat colors which are indistin-guishable from those of TgUPT3 hemizygotes, implying that the difference in gene expression of the highest expressing Tg2PT line and the average TgUPT line is approximately 12 fold. Likewise, one can conclude that the relative expression level of the highest expressing Tg3PT line (Tg3PT3; 2 copies) is similar to that of the average TgUPT line, as a Tg3PT3 hem-izygous mouse has a coat color intermediate between that of a TgUPT3 (1 copy) and TgUPT7 hemizygote (2 copies, with slightly higher than average expression).
DISCUSSION
Combined evidence from a number of transgenic mouse studies and from a molecular analysis of the chinchilla-mottled mutation has led to the conclusion that regulatory elements necessary for full expression of the tyrosinase gene are present between 5.5 and 155 kb upstream from the first exon. A candidate region centered at −15 kb was tested in transgenic mice and was shown to encompass an element with strong enhancer activity in melanocytes of neural crest origin. This element was also able to insulate the transgene from all position effects except variegating ones.
Enhancer activity of the −15 kb region
None of the six transgenic lines generated with the PT construct (containing the mouse tyrosinase promoter and human tyrosinase cDNA) had pigmented coats, whereas all eight lines containing the same DNA fused to the −15 kb region fragment were pigmented, three at wild-type levels. Mice transgenic for the 2PT construct (with only 300 bp of the upstream fragment) were, like the TgPT animals, poor expres-sors, with only one line in four showing any pigmentation. These results point to a strong effect of this 3.6 kb upstream region in enhancing gene expression and/or insulating the transgene from position effects. It was somewhat surprising to find such a low level of coat pigmentation in the TgPT series of mice, as the majority of other transgenic mice containing the same or similar promoter fragments fused to the mouse tyrosinase cDNA (Tanaka et al., 1990) or mini-gene (Yokoyama et al., 1990) were visibly pigmented. Possible reasons for this discrepancy include strain differences and/or the substitution of human sequences for those of the mouse.
It can be difficult to differentiate poor expression due to a lack of strong regulatory elements from that due to position effects on randomly integrated DNA, and it appears that both of these factors play a role in the reduced expression of the TgPT and Tg2PT series relative to the TgUPT series. The existence of position effects can be surmised from a compari-son of phenotypes within the Tg2PT series of mice, where a line with 6 copies (Tg2PT1) is visibly pigmented, although all other lines, with equal or greatly increased numbers of transgene copies, are not. Cell-type-position effects are also likely to be prevalent in the TgPT series, as the two pigmented lines have an aberrant distribution of pigment, in which the eyes, ears, scrotum and Harderian gland (in one of them) are pigmented, but the coat is not. The presence of ear pigmentation in mice with little or no coat pigmentation has been observed in other transgenic lines containing the tyrosinase promoter (Yokoyama et al., 1990). The fact that even the highest expressing lines (Tg2PT1 for the coat, TgPT4 for the eye) are significantly less pigmented than any of the UPT lines indicates that, even in the absence of position effects, trans-genes lacking the −15 kb region are expressed at a much lower level than those containing it.
The reduction of expression of transgenes lacking most or all of the −15 kb region compared to those containing the entire region, in lines presumably not showing position effects (using a coat color comparison of Tg2PT1 and TgUPT3, described earlier), is estimated to be approximately 12-fold. Interestingly, this is similar to the reduction of tyrosinase transcription in the dark cm/cm melanocytes (the tyrosinase gene chromatin structure of which is normal), relative to that of the wild-type (Porter et al., 1991). The deficiency in transcription in the dark cm/cm cells may therefore be completely attributable to the lack of adjacent −15 kb sequence, and may indicate that there are no further upstream regulatory sequences required for skin melanocyte transcription. There was no attempt to optimize the transgenic constructs for high level expression (e.g., by including introns), as an internal comparison of transgene expression levels was the primary purpose of this work. It is thus not meaningful to compare directly transgene expression levels with endogenous tyrosinase gene expression, and these experiments do not address whether there exist other tyrosi-nase locus elements (perhaps located within introns or imme-diately downstream of the coding region, i.e. within the unre-arranged portion of the cm locus) that contribute to full expression of the gene.
The phenotypes of the Tg3PT series are variable and position dependent, so it is difficult, as it is for the other lines, to ascertain the quantitative contribution to gene expression, if any, of the sequences immediately 5′ of the hypersensitive site. If one compares the average relative expression of the Tg3PT series with that of the TgUPT series, one can conclude that deletion of MAR-containing sequences significantly reduces expression. However, if a comparison is made of the highest expressing Tg3PT line with the average expressing TgUPT line (as discussed previously), the expression level seems quite similar. The sequences lacking in 3PT compared to UPT (i.e., most of the MAR) may not therefore contribute to the enhancer activity of the fragment, but do have a significant effect on position independence. A chicken lysozyme gene MAR has been shown to contribute to the insulation of genes from chro-mosomal position effects (Stief et al., 1989; Phi-Van et al., 1990; McKnight et al., 1992); it also showed transcriptional activation activity in stably transformed cells (Stief et al., 1989), but did not appear significantly to activate linked genes in mice (McKnight et al., 1992). The mean level of gene activity in transgenic mice containing immunoglobulin κ gene constructs with an intact intronic MAR was twice as high as those containing transgenes with no MAR (Xu et al., 1989). As in our series, however, the highest expressing animal with no (in our case, little) transgenic MAR sequence had an expression level similar to the average expression of the MAR-containing mice. This suggests that, in the absence of a negative position effect, a MAR has little transcriptional acti-vation activity in transgenic mice.
Cell type specificity of enhancer
Ocular pigment in the pigmented TgPT and Tg2PT mice was distributed evenly between the choroid, RPE and iris. An equivalent expression in these structures was also seen in trans-genic mice with the tyrosinase mini-gene driven by the tyrosi-nase promoter (Klüppel et al., 1991). Interestingly, however, the TgUPT and Tg3PT transgenes were expressed consistently at much higher levels in the choroid and anterior iris than in the RPE and posterior iris. Thus, neural-crest-derived melanocytes had enhanced expression relative to optic-cup-derived melanocytes. What expression there is in the RPE, from the UPT construct, appears to be as independent of position as in the other melanocytes, with visible pigmentation only in the lines with highest transgene copy numbers.
It is possible that the discrepancy in gene expression is not a function of developmental lineage per se, but rather of differing environments. This seems unlikely for a number of reasons, including (1) all analyzed neural-crest-derived melanocytes throughout the body of the transgenic mice seemed to be pigmented in normally proportional amounts (dermal melanocytes of the ear and scrotum, choroidal melanocytes, Harderian gland melanocytes and hair follicle melanocytes) and (2) the posterior layer of the iris, which is derived from the retina, but which exists in a different envi-ronment from that of the RPE, displays the same level of pig-mentation as the RPE in all lines.
There appears to little or no effect of the −15 kb region on expression in the RPE, even when the transgenes are apparently poised for transcription in this cell type (i.e, not subject to position effect). It is likely, therefore, that transcription factor(s) specific to neural crest melanocytes play an important role in tyrosinase gene expression in these cells. A number of nuclear proteins bind this region (data not shown), but their identity has not yet been determined. It also seems likely that there exists an optic-cup-specific enhancer outside this region, but difficulty in obtaining long-term cultures of melanocytes from the RPE has precluded preliminary investigation by molecular means. The pigmented cells of the RPE of cm/cm mice are strongly pigmented (Deol and Truslove, 1981), suggesting that regula-tory elements for this cell type lie within the non-rearranged portion of this mutant locus. The −15 kb region was not hyper-sensitive to DNase I in the neural-crest-derived neuroblastoma cell line Neuro-2a (which has neuronal characteristics), implying that chromatin rearrangement at this site occurs after the separation of this lineage from that of melanocytes.
The two pigmented lines of the Tg3PT series have reduced pigmentation in the choroid relative to their coat color, as compared to the choroidal and coat pigmentation levels of mice of the TgUPT series. This may mean that sequences needed for choroid melanocyte expression are missing in this construct, or that the 3PT transgene in these cells is affected by neigh-bouring sequences only in this cell type.
Position-independent expression of non-mosaic UPT animals
Position effects can cause uniformly reduced (or enhanced) expression of randomly integrated DNA, altered patterns of cell-type-specific expression, or variegation. Position indepen-dence in terms of a direct correlation of expression level to transgene copy number is a criterion generally used in defining chromosomal domain control elements. A linear relationship of transgene expression to copy number was found for the six non-mosaic TgUPT mice, in dramatic contrast to the mice of all other series (TgPT, Tg2PT and Tg3PT), which displayed little correspondence of copy number and expression level. Elimination of most of the MAR containing sequences in the 3PT construct appeared to result in loss of position indepen-dence. Lines Tg3PT2 and Tg3PT5 (2 and 1 transgene copy, respectively) are not detectably pigmented, whereas line Tg3PT3, with 2 transgene copies, is substantially so. This is consistent with the previously mentioned studies showing that MARs can contribute to insulation of genes against position effects. Many sequences with no MAR activity, however, have also been shown to contribute to position independence, and so it remains to be determined whether MAR activity itself is required for the effect of the UPT transgene, or whether it is another (or perhaps non-specific) attribute of the 5′ sequences.
Variegating position effects
Two of the eight TgUPT transgenic lines have a mosaic coat consisting of differently pigmented patches, usually transverse stripes of variable widths. This pattern reiterates that of the clonal developmental history of melanocytes (Mintz, 1967), although some of the transgene-induced stripes are narrower. The darkest color of each line is roughly equivalent to that of mice in the same series with similar copy numbers of trans-genes. This suggests that the dark clones are fully expressing the transgenes, and that much poorer (but usually some) expression of the transgene occurs in the light clones. This is in contrast to position effect variegation in Drosophila, where most variegating genes are either completely on or completely repressed (Spofford, 1976). Mice of the TgUPT1 line generally have more clones that are visibly pigmented than do the mice of line TgUPT9, indicating either an earlier inactivation event (i.e. prior to melanoblast determination) in line TgUPT9, or increased probability of inactivation. As the mice are not inbred, there may also be different genetic modifiers that play a role in the modulation of gene activity. The uniformity of transgene expression of these mice in cell types other than fol-licular melanocytes is difficult to assess. Mosaicism of expression in the RPE of line TgUPT1 is discernable, but no RPE pigmentation is detectable in line TgUPT9.
Mosaic expression of other transgenes expressed in melanocytes (Bradl et al., 1991b; Mintz and Bradl, 1991; Takeuchi et al., 1993) and other cell types (Sweetser et al., 1988a,b; Katsuki et al., 1988; McGowan et al., 1989) has been observed, and as mosaicism of expression is rarely specifically addressed, it seems likely that it is not an unusual occurrence. Heterogeneity of (autosomal) gene expression between cellular clones of the same cell type can also occur naturally in vivo (Rubin et al., 1989; Michaelson, 1993), and may be of funda-mental importance in normal developmental and physiological processes (Mintz, 1971). Little is known of the mechanisms contributing to mosaic expression of autosomal genes or trans-genes in mice. Variability of chromatin structure may play a role, as it does in chinchilla-mottled mice and in position effect variegation in Drosophila; mosaicism in DNA methylation has also been found to be associated with mosaic transgene expression (McGowan et al., 1989). Neither the TgUPT1 nor TgUPT9 line phenotype is noticably affected by the sex of the parent transmitting the transgene, making it unlikely to be a result of or affected by gamete-of- origin-specific imprinting (see Sapienza, 1990).
The mosaic pattern of pigmentation in the Tg3PT1 line is slightly unusual in that the melanocyte clones of the head are more often pigmented than those of the body. This may reflect a time-dependent (the anterior region of the neural crest being formed later than others) or environmentally affected gene acti-vation event related to the chromosomal position of the transgene.
If the variegating effects observed with the TgUPT lines have a similar molecular basis as those observed in Drosophila, it is not surprising that regulatory or structural elements (enhancers and MARs) fail to inhibit the inactivation of the gene in some clones. That is, gene inactivation in Drosophila can spread over 60 chromosome bands in varie-gating mutations (see Tartof et al., 1989), implying that normal domain boundaries and the regulatory elements contained within the domains do not insulate internal sequences from this particular inactivating phenomenon. This has in fact been shown experimentally by Kellum and Schedl (1991) who tested the activity of chromosomal domain boundary sequences in insulating against position effects in Drosophila. Although nine lines transformed with the white gene flanked by these elements fully expressed the gene, a tenth line had a variegated expression pattern, indicating that the boundary elements did not protect against this type of position effect.
An important advantage of studying genes affecting coat colour is the ease with which uniformity of expression can be addressed. Other studies using transgenic mice with putative LCR-containing transgenes have analyzed transgene expression in total tissue, and variability of expression between individual cells or clones has not been a focus of attention. Thus, variegating position effects have not been accounted for in these experiments, and mosaic expression may have occurred unnoticed as LCR containing transgenes can often be expressed, per copy number, within a 2- or 3-fold range of each other. It will be interesting to determine whether varie-gating position effects do occur in LCR-containing transgenic mice, and indeed what causes these effects. Until then, one cannot conclude with certainty that the UPT construct contains LCR activity comparable to other described LCR like elements. Little is known about gene regulation in melanocytes, and the identification and characterization of this genetic element will be of use in defining regulatory mecha-nisms in this cell type as well as in inducing high level, position-independent expression of heterologous genes in melanocytes of transgenic mice.
ACKNOWLEDGEMENTS
We thank Blake Gilks and Robert Kay for valuable discussions and comments on the manuscript, Brigitte Bouchard and Beatrice Mintz for gifts of human and mouse cDNAs, respectively, and Günter Schütz for the tyrosinase genomic clones. This work was supported by a B.C. Health Research Foundation grant to S.D.P.