Embryonic stem cells (ESCs) exist in at least two states that transcriptionally resemble different stages of embryonic development. Naïve ESCs resemble peri-implantation stages and primed ESCs the pre-gastrulation epiblast. In mouse, primed ESCs give rise to definitive endoderm in response to the pathways downstream of Nodal and Wnt signalling. However, when these pathways are activated in naïve ESCs, they differentiate to a cell type resembling early primitive endoderm (PrE), the blastocyst-stage progenitor of the extra-embryonic endoderm. Here, we apply this context dependency to human ESCs, showing that activation of Nodal and Wnt signalling drives the differentiation of naïve pluripotent cells toward extra-embryonic PrE, or hypoblast, and these can be expanded as an in vitro model for naïve extra-embryonic endoderm (nEnd). Consistent with observations made in mouse, human PrE differentiation is dependent on FGF signalling in vitro, and we show that, by inhibiting FGF receptor signalling, we can simplify naïve pluripotent culture conditions, such that the inhibitor requirements closer resemble those used in mouse. The expandable nEnd cultures reported here represent stable extra-embryonic endoderm, or human hypoblast, cell lines.

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Author contributions

Conceptualization: M.L.-A., Y.F.W., J.M.B.; Methodology: M.L.-A., Y.F.W., K.G.V.A., J.M.B.; Software: M.L.-A., J.A.R.H., R.S.M.; Validation: M.L.-A., Y.F.W.; Formal analysis: M.L.-A., Y.F.W., J.A.R.H., R.S.M.; Investigation: M.L.-A., Y.F.W.; Data curation: M.L.-A., J.A.R.H.; Writing - original draft: M.L.-A., J.M.B.; Writing - review & editing: M.L.-A., Y.F.W., J.A.R.H., R.S.M., J.M.B.; Visualization: M.L.-A.; Supervision: Y.F.W., J.M.B.; Project administration: J.M.B.; Funding acquisition: R.S.M., J.M.B.

Funding

This work was funded by HumEn under the European Union Seventh Framework Programme FP7/2007-2013 (HEALTH-F4-2013-602889) and by the Danmarks Frie Forskningsfond (DFF-6110-00009). R.S.M. is supported by a fellowship from the Lundbeckfonden (R303-2018-2939).

Data availability

Full microarray expression and Illumina sequencing data have been deposited in GEO under the accession numbers GSE138012 and GSE138013.

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