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Keywords: RNA-seq
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Journal Articles
Biol Open (2022) 11 (8): bio059147.
Published: 23 August 2022
... producers and functionally significant carbon sinks. These mechanisms are not well understood at the tissue level in seagrasses. Using RNA-seq, we generated transcriptome sequences from tissue of leaf, basal leaf meristem and root organs of Posidonia australis , establishing baseline in situ transcriptomic...
Includes: Supplementary data
Journal Articles
Biol Open (2020) 9 (5): bio050260.
Published: 4 May 2020
... incompletely understood. Due to their suitability for live imaging and their amenability to genetic and pharmacological manipulation, larval zebrafish provide an ideal platform for studying the regulation of secondary cell death in vivo . Here, we use RNA-seq gene expression profiling and compound screening...
Includes: Supplementary data
Journal Articles
Biol Open (2019) 8 (11): bio046789.
Published: 12 November 2019
... generation RNA sequencing (RNA-seq) the transcriptome of germline stem cell (GSC)-like cells isolated from bag of marbles ( bam ) mutant Drosophila ovaries and compared it to the transcriptome of germ line cells isolated from wild-type ovaries. We have complemented this dataset by utilizing an RNA...
Includes: Supplementary data
Journal Articles
Biol Open (2019) 8 (5): bio043372.
Published: 30 May 2019
... conjugated onto another protein as a single unit. Here, to explore whether an organismal defense is mounted against unanchored chains, we conducted RNA-Seq analyses to examine the transcriptomic impact of free poly-ubiquitin in the fly. We found ∼90 transcripts whose expression is altered in the presence...
Includes: Supplementary data
Journal Articles
Biol Open (2019) 8 (4): bio039917.
Published: 23 April 2019
.... Pig Pre-implantation embryos RNA-seq Somatic cell nuclear transfer Somatic cell nuclear transfer (SCNT) is the only available technique that allows the transformation of a single somatic cell into a totipotent embryo that can further develop into an individual animal ( Polejaeva et al...
Includes: Supplementary data
Journal Articles
Biol Open (2019) 8 (3): bio038422.
Published: 4 March 2019
...-temporal-resolution RNA-seq databases and the results showed that temporal collinearity is not supported, which is consistent with our previous data from allotetraploid X enopus laevis . Because the temporal collinearity hypothesis implicitly assumes the collinear order of gene activation, not mRNA...
Includes: Supplementary data
Journal Articles
Biol Open (2016) 5 (8): 1134–1141.
Published: 21 July 2016
... (over- and under-expressed) are also shown in red. (F) RNA-seq time course measurements of seven of the most significantly differentially expressed genes from the analysis shown in E; lines show the averages of three biological replicates, each of which are indicated by individual data points for both...
Includes: Supplementary data