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1-8 of 8
Keywords: RNA-Seq
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Journal Articles
Journal:
Biology Open
Biol Open (2023) 12 (11): bio059778.
Published: 29 November 2023
..., seizures, intellectual disability, nonverbal status, postnatal microcephaly, and ataxia. To define transcriptome signatures of NHE6 LoF, we conducted in-depth RNA-sequencing (RNA-seq) analysis on a haploid NHE6 null cell model. CRIPSR/Cas9 genome editing introduced multiple LoF mutations into SLC9A6...
Includes: Supplementary data
Journal Articles
Mitchell W. Booth, Martin F. Breed, Gary A. Kendrick, Philipp E. Bayer, Anita A. Severn-Ellis, Elizabeth A. Sinclair
Journal:
Biology Open
Biol Open (2022) 11 (8): bio059147.
Published: 23 August 2022
... producers and functionally significant carbon sinks. These mechanisms are not well understood at the tissue level in seagrasses. Using RNA-seq, we generated transcriptome sequences from tissue of leaf, basal leaf meristem and root organs of Posidonia australis , establishing baseline in situ transcriptomic...
Includes: Supplementary data
Journal Articles
Journal:
Biology Open
Biol Open (2020) 9 (5): bio050260.
Published: 4 May 2020
... incompletely understood. Due to their suitability for live imaging and their amenability to genetic and pharmacological manipulation, larval zebrafish provide an ideal platform for studying the regulation of secondary cell death in vivo . Here, we use RNA-seq gene expression profiling and compound screening...
Includes: Supplementary data
Journal Articles
Journal:
Biology Open
Biol Open (2019) 8 (11): bio046789.
Published: 12 November 2019
... generation RNA sequencing (RNA-seq) the transcriptome of germline stem cell (GSC)-like cells isolated from bag of marbles ( bam ) mutant Drosophila ovaries and compared it to the transcriptome of germ line cells isolated from wild-type ovaries. We have complemented this dataset by utilizing an RNA...
Includes: Supplementary data
Journal Articles
Jessica R. Blount, Danielle N. Meyer, Camille Akemann, Sean L. Johnson, Katherine Gurdziel, Tracie R. Baker, Sokol V. Todi
Journal:
Biology Open
Biol Open (2019) 8 (5): bio043372.
Published: 30 May 2019
... conjugated onto another protein as a single unit. Here, to explore whether an organismal defense is mounted against unanchored chains, we conducted RNA-Seq analyses to examine the transcriptomic impact of free poly-ubiquitin in the fly. We found ∼90 transcripts whose expression is altered in the presence...
Includes: Supplementary data
Journal Articles
Xiaoyan He, Cheng Tan, Zicong Li, Chengfa Zhao, Junsong Shi, Rong Zhou, Xingwang Wang, Gelong Jiang, Gengyuan Cai, Dewu Liu, Zhenfang Wu
Journal:
Biology Open
Biol Open (2019) 8 (4): bio039917.
Published: 23 April 2019
.... Summary: Comparative transcriptome analyses of cloned and in vivo fertilized pre-implantation embryos: transcriptional defects and reprogramming barriers in porcine somatic cell nuclear reprogramming. Pig Pre-implantation embryos RNA-seq Somatic cell nuclear transfer Somatic cell...
Includes: Supplementary data
Journal Articles
Mariko Kondo, Megumi Matsuo, Kento Igarashi, Yoshikazu Haramoto, Takayoshi Yamamoto, Yuuri Yasuoka, Masanori Taira
Journal:
Biology Open
Biol Open (2019) 8 (3): bio038422.
Published: 4 March 2019
...-temporal-resolution RNA-seq databases and the results showed that temporal collinearity is not supported, which is consistent with our previous data from allotetraploid X enopus laevis . Because the temporal collinearity hypothesis implicitly assumes the collinear order of gene activation, not mRNA...
Includes: Supplementary data
Journal Articles
Journal:
Biology Open
Biol Open (2016) 5 (8): 1134–1141.
Published: 21 July 2016
... during early zebrafish development has long-term consequences that affect immune gene expression and regulation in adulthood. Chronic stress Glucocorticoid Developmental programming Immune system RNA-seq Zebrafish Chronic psychosocial stress contributes significantly to a wide variety...
Includes: Supplementary data