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1-5 of 5
Keywords: RNA sequencing
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Journal Articles
Rebecca A. Slick, Jessica Sutton, Margaret Haberman, Benjamin S. O'Brien, Jennifer A. Tinklenberg, Aashay Mardikar, Mariah J. Prom, Margaret Beatka, Melanie Gartz, Mark A. Vanden Avond, Emily Siebers, David L. Mack, J. Patrick Gonzalez, Allison D. Ebert, Kanneboyina Nagaraju, Michael W. Lawlor
Journal:
Biology Open
Biol Open (2024) 13 (9): bio060542.
Published: 5 September 2024
... study uses RNA sequencing of skeletal muscle from two mdx mouse models to identify high mobility group box 1 (HMGB1) as a candidate biomarker potentially contributing to DMD-related inflammation. HMGB1 protein content was increased in a human iPSC-derived skeletal myocyte model of DMD...
Includes: Supplementary data
Journal Articles
Journal:
Biology Open
Biol Open (2021) 10 (3): bio058503.
Published: 26 March 2021
... Physiological color change RNA sequencing Thermoregulation Color change is mediated by synchronous intracellular transport of pigmented organelles in chromatophores and has functional roles in signaling (visual communication), background matching (camouflage), and thermoregulation ( Baling et al...
Includes: Supplementary data
Journal Articles
Journal:
Biology Open
Biol Open (2018) 7 (1): bio028498.
Published: 17 January 2018
... result in gene fragmentation and imprecise gene annotation. Transcript abundance estimation from RNA sequencing (RNA-seq) data relies on read quality, library complexity and expression normalization. In addition, the quality of the genome sequence used to map sequencing reads, and the gene annotation...
Includes: Supplementary data
Journal Articles
Journal:
Biology Open
Biol Open (2017) 6 (9): 1383–1390.
Published: 15 September 2017
... as the outer membrane but more regular arranged; the lumen between notochord cells was hydrostatic and sticky. Then, we used the RNA sequencing data from the embryos and larvae of Ciona savignyi to identify ECM genes and acquire their expression patterns. We identified 115 unigenes as 67 ECM genes, and 77...
Includes: Supplementary data
Journal Articles
Evgenia V. Kupriyanova, Evgeniy V. Albert, Aleksandra I. Bliznina, Polina O. Mamoshina, Tatiana A. Ezhova
Journal:
Biology Open
Biol Open (2017) 6 (6): 832–843.
Published: 11 May 2017
... time regulation. We show that fas5 mutation leads to a constitutive shade avoidance syndrome, accompanied by leaf hyponasty, petiole elongation, lighter leaf color and early bolting. Other alleles of TOP1α demonstrate the same shade avoidance response. RNA sequencing confirmed the activation of shade...
Includes: Supplementary data